Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01645 ATGCTTAACAACACAACTCCACTTCAGCCCTATGCTTTTTCCTTCAGCACCTCTTTTGTTTTCTCAATTGTGTCCCCAAGTTCTGGCTCTGGTGGCTTTGGCCTAGCCTTCACCATAGCACCCTCAACACAGTTTCCTGGGGCTGCGGCTGGTCATTTTCTTGGTCTTGTTAACTCAACCAATGATGGAGATTCCTCAAACCACATCTTTGCAGTTGAGTTTGACACAGTGAATGGCTACAAAGGTGATTCAGACAGCGAAGGAAACCATGTTGGGGTCAATGTAAATGGAATGGGCTCAAAGATTACTGAGCCAGCTGCATATATTGAAGAGGGCACTGATAGTGTGAAGGATGATTTTAGAATGGCCAAGGTTGATGCTGTCCAAGCTTGGATAGAATATGATGGTGAAAAGAGAACTCTGAATATAACAGTGGCTCCTTTGCCTTTACAAAAGCCTAGTAAACCACTTATAGAGAATTATGGCATTGAGCTTTATGGTGTCATGGAGGAAAACATGTTTGCTGGTTTCTCAGCATCAACAGGCCAGGAAACAAGCTCTCATTATCTCCTAGGGTGGAGTTTTGCAGTGAATGGTGTTGCCCCTTCATTGAACATTTCCAACCTTCCAAAGCCACCACCAAAGGAGATAGATCCAACCTCATTTCCTTGGGTCAAGGTTGCAATTGGCATCTTGTCAGACTGGGAGATGGATTGTCCACACAGGTTTAGGTACAAAGATCTTCACCTAGCAACAAAGGGGTTCATAGAGAGCCAGCTCATAGGAGTTGGAGGCTTTGGTGCTGTGTACAAAGGTGTCTTACCTTCCACAGGAACTGAGGTTGCTGTTAAGAGGATTGTGAGGAGCCCTTTCCATGGAATGAGAGAGTTTGCAGCTGAGATTGAAAGCCTAGGAAGGTTGAGGCACAAGAATTTGGTGAATCTTCAAGGGTGGTGCAAGAAAAAGAATGATCTACTACTAGTCTATGACTTCATCTCAAATGGTAGCCTAGATTCCATCCTATATAACCCCATTGACAATAGCTTTGTTTTGAATTGGGATCAAAGATTCAACATTCTCAAAGGCATCAGTGCTGGACTATTGTACTTGCATGAAGAGTGGGAGCAAGTGGTGATCCATAGAGACGTGAAAACTAGCAACATTTTGATAGATGGGAACCTGAATGCACGTTTAGGTGACTTTGGACTTGCGAGGCTCTATAACCATGGTCAAGTTTCACACACAACCAATGTGGTTGGCACTATAGGGTACATTGCACCAGAGTTAACTCGCACAGGGAAGGCTTCTACAAGAACTGATGTGTATGCATTTGGTGTTGTGCTCCTTGAAGTGGCCGCAGGGAAGAGGCCAGTTGATTCAGATCAGTTTTTCTTGGTGGAGTGGGTTATTGAGAATTACCATCTTGGTCAAATTCTTGAGGTGGTTGATCCTAAGATGAATTCAGTTTATGATGAGGAAGAGGTTGAGTTGGTTCTGAAGTTGGGTCTATTGTGCACTCAACATAGAGCAGATTATAGACCTACCATGAAACAAGTTACGAGATACCTGAACTTTGATGACCCTCTCCCTGAGATCGGTGATTGGGGAGATGGTGTTTCTAATGCTAGCAGCAGAATGAGTTCAGGTTTCTTGGAAGTCACGTCATCTATGAGAACTGTTGCAACATCAGGGTATTTATCATCCATTAGCATGAGTACCAAGTCCATAGATGCTGGTAGATAG 1743 0.4383 MLNNTTPLQPYAFSFSTSFVFSIVSPSSGSGGFGLAFTIAPSTQFPGAAAGHFLGLVNSTNDGDSSNHIFAVEFDTVNGYKGDSDSEGNHVGVNVNGMGSKITEPAAYIEEGTDSVKDDFRMAKVDAVQAWIEYDGEKRTLNITVAPLPLQKPSKPLIENYGIELYGVMEENMFAGFSASTGQETSSHYLLGWSFAVNGVAPSLNISNLPKPPPKEIDPTSFPWVKVAIGILSDWEMDCPHRFRYKDLHLATKGFIESQLIGVGGFGAVYKGVLPSTGTEVAVKRIVRSPFHGMREFAAEIESLGRLRHKNLVNLQGWCKKKNDLLLVYDFISNGSLDSILYNPIDNSFVLNWDQRFNILKGISAGLLYLHEEWEQVVIHRDVKTSNILIDGNLNARLGDFGLARLYNHGQVSHTTNVVGTIGYIAPELTRTGKASTRTDVYAFGVVLLEVAAGKRPVDSDQFFLVEWVIENYHLGQILEVVDPKMNSVYDEEEVELVLKLGLLCTQHRADYRPTMKQVTRYLNFDDPLPEIGDWGDGVSNASSRMSSGFLEVTSSMRTVATSGYLSSISMSTKSIDAGR 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01645 580 SUPERFAMILY Concanavalin A-like lectins/glucanases 11 214 IPR013320 -
Cca07g01645 580 SMART serkin_6 255 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01645 580 CDD lectin_legume_LecRK_Arcelin_ConA 35 199 IPR001220 GO:0030246
Cca07g01645 580 Gene3D Transferase(Phosphotransferase) domain 1 332 527 - -
Cca07g01645 580 ProSiteProfiles Protein kinase domain profile. 255 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01645 580 CDD STKc_IRAK 261 524 - -
Cca07g01645 580 Gene3D Phosphorylase Kinase; domain 1 240 331 - -
Cca07g01645 580 SUPERFAMILY Protein kinase-like (PK-like) 238 526 IPR011009 -
Cca07g01645 580 Gene3D - 1 206 - -
Cca07g01645 580 Pfam Legume lectin domain 12 210 IPR001220 GO:0030246
Cca07g01645 580 ProSitePatterns Protein kinases ATP-binding region signature. 261 284 IPR017441 GO:0005524
Cca07g01645 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 378 390 IPR008271 GO:0004672|GO:0006468
Cca07g01645 580 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VI.1-RELATED 11 571 - -
Cca07g01645 580 PANTHER - 11 571 - -
Cca07g01645 580 Pfam Protein kinase domain 257 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01645 Cca-Chr7 41807848 41809668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01645 14 536 Receptor kinase-like Gene Family AT3G08870 50.538 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca07g01645 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01645 - - gmx:100802724 968.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01645 07 41807848 41809668 Cca07g01645 07 41807848 41809668 ECH
Cca07g01645 07 41807848 41809668 Cca01g01700 01 39362813 39365337 PCT