Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01644 ATGGAAGAAGAGGGACATGGCTCGGAATGTTACAAGACAAGCCCTTCTAACGAGGAAGATTATTGTGAAGAAAGTGAGGCCAATAATGAAGATAGAAGTAAGCAAAAGAACAATGGAGGAAGCTCAAGCAACAGCACTGTGGAAGAAAACGAGAAGAAGACAACAACAGTGAGGCCTTATGTTAGATCCAAGTTGCCTAGGCTACGTTGGACACCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAAAGACTTGGAGGACAAGAGAGAGCAACCCCAAAGTTAGTTCTTCAGTTGATGAATATCAAAGGTTTAAGTATTGCTCATGTCAAGAGTCATTTACAGATGTACAGGAGCAAGAAGATAGACACAAATCAAGTATTGGGTGATCCTAGGCTCCTTGTAGAAACTGGAGACAAAAATGTTTACAAGCTTAGCCAACTTCCCATGCTTCAAGGCTACAATCCAAAACAAAGTTCAGCATACAGATATGGATATGGGGATGCTTCTCTTGCTATCTATGAAAACATGGTGCACAGGCCCTTCCTGAGTAGGAGTACTTCAGTAGATGAATCTGGACCTGAATTTTATGGCAGCATATTGAGTGAGAGGATCCATGGGACCAATAGTAACATCAATTGGACTCACAATAAGTTCCAAGTTGATTCTTCACGTTTCAACGAAATGTCAACAAATAAAGTTCATGAACAAAAAGACAAGTTCTTCTCATTTGGTGGCCATGAATCCTCATGCACACAAATAAAAATGAGCCAGGTTGGTCTAAATCAATCTACTCAACAGCCAAGTGCACAACAGCTCATGCCCTATAATAAGTTGGCAACAAATCCCGTGGAACTAAAGACCTTGAAAAGGAAGGCTTCAGATATTGATCACCTTGATTTGAATCTGTCACTAAAAATAAATTCAAGGGTCGTCAGTGATGAGAACCAAGGAAGTAAAAGCATGGTGGACCATGAAGTTGATAGTAATCTATCACTCTCTTTGTGTTCTCAGTCCTCGTTCTCTCATCTTAGCAACAGGTTGAGAAGAGCACAAGATCATTCTAAGGGGCAAGGGGAAAGAGCCAGTGCTCTGGATCTGACTATATGA 1110 0.4099 MEEEGHGSECYKTSPSNEEDYCEESEANNEDRSKQKNNGGSSSNSTVEENEKKTTTVRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKIDTNQVLGDPRLLVETGDKNVYKLSQLPMLQGYNPKQSSAYRYGYGDASLAIYENMVHRPFLSRSTSVDESGPEFYGSILSERIHGTNSNINWTHNKFQVDSSRFNEMSTNKVHEQKDKFFSFGGHESSCTQIKMSQVGLNQSTQQPSAQQLMPYNKLATNPVELKTLKRKASDIDHLDLNLSLKINSRVVSDENQGSKSMVDHEVDSNLSLSLCSQSSFSHLSNRLRRAQDHSKGQGERASALDLTI 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01644 369 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 7 369 IPR044848 GO:0003700
Cca07g01644 369 Gene3D - 65 122 - -
Cca07g01644 369 MobiDBLite consensus disorder prediction 347 369 - -
Cca07g01644 369 MobiDBLite consensus disorder prediction 34 50 - -
Cca07g01644 369 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 66 121 IPR006447 GO:0003677
Cca07g01644 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 122 IPR017930 -
Cca07g01644 369 PANTHER - 7 369 - -
Cca07g01644 369 SUPERFAMILY Homeodomain-like 65 120 IPR009057 -
Cca07g01644 369 Pfam Myb-like DNA-binding domain 68 118 IPR001005 -
Cca07g01644 369 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01644 Cca-Chr7 41768013 41769782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01644 54 123 G2-like Transcription Factor Family AT2G42660 78.571 1.07e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca07g01644 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01644 - - gsj:114395715 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01644 07 41768013 41769782 Cca01g01928 01 45065387 45067507 ECH
Cca07g01644 07 41768013 41769782 Cca07g01644 07 41768013 41769782 ECH