Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01643 ATGGCCACTCCTTTGGCCTACCAAGAGCACCTTCCTGCATCACCCAATTGGCTGAACAAAGGTGACAACGCATGGCAGTTAACAGCAGCAACTCTGGTTGGCCTTCAGAGCATGCCAGGTCTCGTGATCCTCTACGCCAGCATAGTGAAAAAGAAATGGGCAGTGAACTCGGCCTTCATGGCTCTCTATGCCTTTGCAGCTGTTCTCATATGTTGGGTGCTTGTGTGTTTCCGAATGGCCTTTGGGGAGCAACTTTTCCCCTTTTGGGGCAAGGGTGCACCAGCACTAGGCCAAAAGTTCCTCACGAAACGAGCCTTGGTCGTTGAAACCATCCACCACTATGATAATGGCACTGTTGAGAGCCCTGCTGAAGAACCCTTTTACCCCATGGCCTCACTTGTCTATTTCCAATTCACTTTTGCTGCTATCACTCTCATCCTTTTGGCTGGCTCTGTCCTTGGAAGAATGAACATCAAGGCTTGGATGGCTTTTGTGCCTCTTTGGTTAATCTTTTCTTACACTGTTGGGGCTTTTAGCCTCTGGGGTGGTGGCTTTCTCTACCAATGGGGTGTCATTGACTACTCTGGTGGATATGTCATCCACCTTTCCTCTGGAATCGCTGGCTTAACTGCTGCTTATTGGGTTGGACCAAGATTCAAGAATGATAGGGAGAGGTTTCCACCAAACAATGTGTTGCTTATGCTTGCGGGTGCTGGTTTATTGTGGATGGGGTGGTCAGGGTTCAACGGTGGAGCACCATATGCTGCAAACATTGCATCATCAATTGCAGTGTTGAACACAAACATTTGTGCAGCCACAAGCCTCCTTGTGTGGACCACTCTCGATGTCATCTTCTTCGGGAAACCCTCCGTGATTGGAGCTGTGCAGGGCATGATGACCGGACTTGTATGCATCACCCCAGGAGCAGGACTTGTGCAATCGTGGGCGGCTATAGTGATGGGAATGTTATCTGGGAGTGTTCCATGGGTGACCATGATGATTTTGCACAAAAAGTCAAGCTTGTTGCAAAAGGTCAGGCTTTCTTTTCTCATGTCACACGATATTTTCCACTTCACTTTTGCTGTGCACGTGTCTCTGAATTTTCATTTAATATTGGAAAAAACAATGCCCAAAACCCCAGCTCATAACTTGATTCCAACTTTACAACCACTTTCATTTCTTTTTGCCCACTTAACTGTTCTTTATAAGATGATGTAA 1218 0.4713 MATPLAYQEHLPASPNWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVCFRMAFGEQLFPFWGKGAPALGQKFLTKRALVVETIHHYDNGTVESPAEEPFYPMASLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRFKNDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANIASSIAVLNTNICAATSLLVWTTLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGMLSGSVPWVTMMILHKKSSLLQKVRLSFLMSHDIFHFTFAVHVSLNFHLILEKTMPKTPAHNLIPTLQPLSFLFAHLTVLYKMM 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01643 405 ProSitePatterns Ammonium transporters signature. 193 218 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cca07g01643 405 PRINTS Rhesus blood group protein signature 263 285 IPR002229 GO:0005887
Cca07g01643 405 PRINTS Rhesus blood group protein signature 232 250 IPR002229 GO:0005887
Cca07g01643 405 PRINTS Rhesus blood group protein signature 137 153 IPR002229 GO:0005887
Cca07g01643 405 PRINTS Rhesus blood group protein signature 318 336 IPR002229 GO:0005887
Cca07g01643 405 PANTHER AMMONIUM TRANSPORTER MEP2 1 349 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cca07g01643 405 Gene3D Ammonium transporter AmtB like domains 4 349 IPR029020 -
Cca07g01643 405 PANTHER AMMONIUM TRANSPORTER 1 349 - -
Cca07g01643 405 Pfam Ammonium Transporter Family 24 337 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cca07g01643 405 SUPERFAMILY Ammonium transporter 17 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01643 Cca-Chr7 41721502 41726571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01643 130 355 Inorganic Solute Cotransporters AT2G38290 82.018 1.29e-125 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01643 K03320 - gmx:100790119 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01643 07 41721502 41726571 Cca07g01643 07 41721502 41726571 ECH