Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01640 ATGGAGTGCATCAATAACCCTACCTCTCCTGAAGGGTCATCATCTTCCAAGTCCAACAAGGAGAAAACGGGTGTGAAGAAAAGCAGCAACAAGGGAGTGAAGCTTTCCACTGATCCACAAAGCGTGGCAGCAAGAGAAAGAAGGCACAGAATCAGTGACAGGTTCAAGATCCTTCAGAGCATGGTCCCTGGTGGGAGCAACATGGACACGGTTTCTATGTTGGAGGGAGCCATTCACTACGTGAAGTTCCTCAAGACACAGATTTGGCTTCACCAAGCATTGATAAACTTTGTAGACGTTGATCATGAGTCTCCTGTGTTCCTCCCCGCAGAGTATAATAACTTCTCTGATGAACACTCAATTTCCCTTCAGCAAAACACTTCTTCAGTAGTTTCAGTTTGTGCTCAGCAGAGTTTGCCACAACTACCACTAGCCCAATGCCACTTCCAAGGTGAAGAAGATTGTAATAACACCTTTGGTGCCACTATGAAATATTGGCCAGCTTAG 507 0.4576 MECINNPTSPEGSSSSKSNKEKTGVKKSSNKGVKLSTDPQSVAARERRHRISDRFKILQSMVPGGSNMDTVSMLEGAIHYVKFLKTQIWLHQALINFVDVDHESPVFLPAEYNNFSDEHSISLQQNTSSVVSVCAQQSLPQLPLAQCHFQGEEDCNNTFGATMKYWPA 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01640 168 MobiDBLite consensus disorder prediction 1 19 - -
Cca07g01640 168 CDD bHLH_AtIND_like 36 95 - -
Cca07g01640 168 Pfam Helix-loop-helix DNA-binding domain 45 84 IPR011598 GO:0046983
Cca07g01640 168 MobiDBLite consensus disorder prediction 1 47 - -
Cca07g01640 168 SMART finulus 41 90 IPR011598 GO:0046983
Cca07g01640 168 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 84 IPR011598 GO:0046983
Cca07g01640 168 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 16 153 - -
Cca07g01640 168 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 40 98 IPR036638 GO:0046983
Cca07g01640 168 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 16 153 IPR045843 GO:0003700|GO:0006355
Cca07g01640 168 Gene3D - 35 92 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01640 Cca-Chr7 41699253 41699846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01640 25 110 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 45.745 4.46e-22 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca07g01640 HLH 8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01640 - - gmx:113000114 229.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01640 07 41699253 41699846 Cca07g01640 07 41699253 41699846 ECH