Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01634 ATGAGGACCCCTTTGCCCTCTACTCGGTTCATCTTCGTGGCCTCGCTCTGTTTCCTCGCAAGCTTATCACAATTCGAGGCCAAAACCATCGACCCCTACAAGGTTCTTGGGGTTGATAAAAATGCAAGTCAGCGGGAAATACAGAAGGCATTTCACAAACTCTCTCTCCAGTATCACCCTGACAAGAACAAAGCCAAGAGTGCACAAGAGAAGTTTTCTCAGATCAATAACGCATATGAGATTTTATCGGATGAAGAGAAGAGAAAGAATTATGACATGTATGGAGATGAGAAAGGAAATCCTGGATTTCAAGGTGGCCATCCTGGAGGCCAGGGTGGATATACTTATTTTACAGGGGGTGGTCCTGGACAAGGCAATTTTAACTTCAAACCTGGGGGGGACTGGCAGGGAATGGGTGATCAGGAAGGATCTAAATCATTCTCCTTTTCCTTTGGCAGCTCGGGTGATTCAAATCCTTTTGGATTTGGTTTGGATGATCTTTTTGGCAGTTTTTTTGGTGGTGGTGGAAAACAGTTTGGTGGTTTTGGCAGTTCAAGTAGTTCTCAATCTGGGTCCAAGAGTTCTCCCAAAAGTCTTAGAGCTATAAATTCAAATATCTACAAGAAAGAAATAGAAAGTGCAGGGATGACTTGGCTTTTGTTATCTTATATACCATCATCAAAGAATATTCAATACTTTGAGTCCACTATAGAGGAGGTTGCCAGTTCATTGCAAGGAGCTTTGAAGGTTGGAAGCATTAACTGTGAAAAGGAAGACTCATTCTGTAAAGAGCTTGGCATATATCCACGTAGAGCTCCAAGGATTTTTGCTTTTTCTTACAAGGAGAATGAAAAAGGTTCTTTGGTGGAGTACAGTGGAGACTTGGGTGTTAAGAATTTGAAGTCTTTCTGTCAAGAACACTTGCCAAGGTTTTCAAAACGAACTGACTTGAATCATGTTGATCAATACAGCACTACTGCCAAGTTGCCTAGGGTGCTGCTTCTCTCCACCAAGAAAGACACTCCTGTAATTTGGCGTGTTCTTAGTGGCTTGTATCACAACCGCATTACTTTCAGTGATGCAGAGGTTCATGATGTTTCTGATCCAAGAGTGAAAGTTCTAGGAGTTGATGCACTTCCAGCTATTGTAGGTTGGCTACCTAATGGAAAAAAGCTTGTTCTGAAAACTGGGATTTCTGTAAAAGATTTAAAATCTGCAGTTCTTGATCTTAGTAACACACTTGATTATTTTGAAAAAGTAAGTAAAAAGGAAGCATCAGGTCAGGCTAAGAAGGCACAAACTGATTCAGATGAGGGACGCATACCATTACTTTCTCGGTCAAACTTTGAGGCTCTTTGTGGTGAGAAAACTCCAGTCTGCATAATTGGTGCCTTCAGATCTTCTAAAGCTAAAGAAAAGCTAGAATCAATCCTCTCTTTGGTCTCTCAGAAATCTTTGTCAAGACGACCGAATCATGGATCCAGCAGTTCTAGGGACTCAATTTCCTATGCTCTCTTGGATGCTGCAAAGCAACAGTCATTTCTAAATGCATTTGATAAAAAAGGTTTTAAATCATCAAATCAGTTGTTAATTGCCTACAAACCTCGGAGAGGGAAGTACAGTGTATTTATGGATGAAATGAGCATAGAAGAGATAGAGAATTTCATCAGTTCTGTTCTCAGTGGAGATATACCCTTCAGAGAAACACGTAGGAAGCCTGTACTCGAGCATTAG 1734 0.4106 MRTPLPSTRFIFVASLCFLASLSQFEAKTIDPYKVLGVDKNASQREIQKAFHKLSLQYHPDKNKAKSAQEKFSQINNAYEILSDEEKRKNYDMYGDEKGNPGFQGGHPGGQGGYTYFTGGGPGQGNFNFKPGGDWQGMGDQEGSKSFSFSFGSSGDSNPFGFGLDDLFGSFFGGGGKQFGGFGSSSSSQSGSKSSPKSLRAINSNIYKKEIESAGMTWLLLSYIPSSKNIQYFESTIEEVASSLQGALKVGSINCEKEDSFCKELGIYPRRAPRIFAFSYKENEKGSLVEYSGDLGVKNLKSFCQEHLPRFSKRTDLNHVDQYSTTAKLPRVLLLSTKKDTPVIWRVLSGLYHNRITFSDAEVHDVSDPRVKVLGVDALPAIVGWLPNGKKLVLKTGISVKDLKSAVLDLSNTLDYFEKVSKKEASGQAKKAQTDSDEGRIPLLSRSNFEALCGEKTPVCIIGAFRSSKAKEKLESILSLVSQKSLSRRPNHGSSSSRDSISYALLDAAKQQSFLNAFDKKGFKSSNQLLIAYKPRRGKYSVFMDEMSIEEIENFISSVLSGDIPFRETRRKPVLEH 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01634 577 Coils Coil 65 85 - -
Cca07g01634 577 ProSiteProfiles dnaJ domain profile. 31 95 IPR001623 -
Cca07g01634 577 CDD DnaJ 31 84 IPR001623 -
Cca07g01634 577 PANTHER DNAJ PROTEIN ERDJ3A 7 576 - -
Cca07g01634 577 Gene3D DnaJ domain 20 103 IPR036869 -
Cca07g01634 577 SMART dnaj_3 30 87 IPR001623 -
Cca07g01634 577 Gene3D Glutaredoxin 196 315 - -
Cca07g01634 577 Pfam DnaJ domain 31 92 IPR001623 -
Cca07g01634 577 ProSitePatterns Nt-dnaJ domain signature. 72 91 IPR018253 -
Cca07g01634 577 SUPERFAMILY Thioredoxin-like 202 308 IPR036249 -
Cca07g01634 577 SUPERFAMILY Chaperone J-domain 28 123 IPR036869 -
Cca07g01634 577 PRINTS DnaJ domain signature 33 51 IPR001623 -
Cca07g01634 577 PRINTS DnaJ domain signature 51 66 IPR001623 -
Cca07g01634 577 PRINTS DnaJ domain signature 67 87 IPR001623 -
Cca07g01634 577 PRINTS DnaJ domain signature 87 106 IPR001623 -
Cca07g01634 577 PANTHER DNAJ PROTEIN ERDJ3A 7 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01634 Cca-Chr7 41572472 41576614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01634 19 94 C2H2 Transcription Factor Family AT1G74250 39.024 1.53e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01634 - - gmx:100796871 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01634 07 41572472 41576614 Cca07g01634 07 41572472 41576614 ECH