Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01613 ATGGAGGGtcatcatctccatcaccatcatcgacaacaaatacaacaacaccatcaccaccctcataacatcaCAACTAGTGTCAACGTGGATGTGACGGATAGGTTCCCCCAATGGAGCATCCAAGAGACAAAAGAGTTCCTCGTGATCCGTGCAGAGCTGGATCAGACTTTCATGGAGACAAAGAGGAACAAGCAGCTTTGGGAAGTCATCTCCAACCGCATGAAGGAAAAGGGTTACCATAGaagtgcagagcagtgcaagtgcaagtggaaAAACCTAGTTACTCGCTATAAGGGATGTGAAACGATGGAGCCAGAGGCGATGAGGCAGCAATTTCCGTTTTACAATGAGCTTCAAGCGATTTTCACAGCGAGGATGCAGAGAATGTTGTGGGCTGAAGCAGAAGGAGGGTCCAATAAGAAGAAGGGGGTGCAGCATCTATCTTCCGAGGAAGAGGAAGAGGGCAATGAGGAGAGTGAGGGTGATATTCATCACAAGGGTGGTGGCATGAGCAGAAAGAAGAAGAAGGGCAAGAtggtagttggtggaggaagtggtggtggtgttgCCAACAATAGTAATTTGGAGAGTTTGAAGGAGATAATGGAAGAGTTCATGAGGCAACAGATGCAAATGGAGGCACAATGGATGGAGGCATTTGAGGCAAGggagaatgagaggaggttgaaggagatggagtggagacaaaccatggaggcattggagaatgagaggatgatgatggatcaaagatggagagagagggagGAGCAAAGAAGGATTAGGGAAGAAGTTAGGGCTGACAAGAGAGATGCTCTAATCACAGCTTTGCTCAACAAGCTTAGAAGAGAAGAGATGTAG 864 0.3472 MEGHHLHHHHRQQIQQHHHHPHNITTSVNVDVTDRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNRMKEKGYHRSAEQCKCKWKNLVTRYKGCETMEPEAMRQQFPFYNELQAIFTARMQRMLWAEAEGGSNKKKGVQHLSSEEEEEGNEESEGDIHHKGGGMSRKKKKGKMVVGGGSGGGVANNSNLESLKEIMEEFMRQQMQMEAQWMEAFEARENERRLKEMEWRQTMEALENERMMMDQRWREREEQRRIREEVRADKRDALITALLNKLRREEM 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01613 287 Coils Coil 196 216 - -
Cca07g01613 287 PANTHER - 1 285 - -
Cca07g01613 287 MobiDBLite consensus disorder prediction 137 193 - -
Cca07g01613 287 PANTHER TRANSCRIPTION FACTOR MYB FAMILY-RELATED 1 285 - -
Cca07g01613 287 Gene3D - 39 100 - -
Cca07g01613 287 MobiDBLite consensus disorder prediction 1 22 - -
Cca07g01613 287 Pfam Myb/SANT-like DNA-binding domain 38 122 IPR044822 -
Cca07g01613 287 CDD GT1 37 102 - -
Cca07g01613 287 ProSiteProfiles Myb-like domain profile. 39 95 IPR001005 -
Cca07g01613 287 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01613 Cca-Chr7 41239293 41240535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01613 34 285 Trihelix Transcription Factor Family AT5G01380 54.682 3.57e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca07g01613 Myb_DNA-bind_4 1.9e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01613 - - gmx:100794230 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01613 07 41239293 41240535 Cca07g01613 07 41239293 41240535 ECH