Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01611 ATGGGAAACTGCTGCAGATCTCCGGCCGCGGTGGCGCGGGAGGACGTCAAATCCACCTTCTCCAACGCCGACCACGGGAAGCCGCCGGCGGCCAAGCAGAAGGCGCCCATGACGGTGCTGGCGGGCGTGGCCAAGGAGAACATCGAGGACAGGTACCTGGTGGACCGGGAGCTCGGCCGGGGGGAGTTCGGGGTGACCTACCTCTGCATCGACAGGGACACGCGGGAGCTGCTGGCCTGCAAGAGCATCTCCAAGCGGAAGCTGCGGACCGCCGTCGACGTCGAGGACGTCCGCCGCGAGGTCGCCATCATGCGCCACCTGCCGGACAGCCCCAGCATCGTCTCGCTCCGCGAGGCCTGCGAGGACGACAATGCCGTCCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGGATCGTCGCCCGCGGCCACTACACCGAGCGCGCCGCCGCCGCCGTCACGCGCACCATCGTCGAGGTCGTCCAGCTCTGCCACAAGCACGGCGTCATCCACCGCGACCTCAAGCCCGAGAACTTCCTCTTCGCCAACAAGAAGGAGAACTCGCCGCTCAAGGCCATTGATTTTGGCCTCTCCATTTTCTTCAAGCCAGGTGAGAGATTCTCAGAAATTGTTGGAAGTCCATATTATATGGCTCCAGAGGTGCTAAAGCGGAATTATGGACCAGAAATAGATATATGGAGTGCAGGAGTAATTCTTTACATCTTATTGTGTGGCGTTCCCCCTTTTTGGGCTGAATCTGAGCAAGGAGTTGCACAGGCCATTCTTCGAGGGCTTATAGATTTCAAACGGGAACCTTGGCCCAGTATTTCTGAAGGTGCTAAAAGCCTTGTTAGGCAAATGTTAGAACCAGACCCTAAGCTTCGATTAACTGCCAAACAAGTGCTTGAGCACCCGTGGCTTCAAAATGCTAAGAAGGCTCCCAATGTTCCGCTTGGAGATGTTGTCAAATCAAGGCTTAAGCAATTTTCAATGATGAATAGATTCAAAAGAAAAGCCCTTAGGGTCATTGCTGATTTCTTATCCAATGAAGAAGTTGAAGACATCaaagatatgttcaagaaaatggataatgataatgatGGCATTGTTTCCATTGAAGAACTAAAAGCTGGATTTCGAAACTTTGGGTCTCAGCTTGCTGAGTCTGAAATTCAGTTGTTTATTGAAGCTGTAGATAATAATGGTAAGGGAACACTAGACTACGGAGAATTTGTTGCTGTTTCCCTTCATTTAAAGAGAATGGCTAATGACGAGCATCTTCGCAAGGCCTTCTCCTATTTTGACAAAGATGGGAATGGGTATATTGAACCGGACGAACTACGGAATGCCTTGATGGAAGACGGAGCAGATGACTGTACAGATGTGGCAAATGACATCTTCCAAGAAGTAGACACGGACAAGGATGGCCGTATCAGCTATGATGAATTTGTTGCTATGATGAAAACGGGAACGGATTGGAGAAAAGCGTCTAGGCATTACTCACGTGGGAGATTCAATAGCTTGAGCTTAAAGTTGATGAAAGACGGTTCTTTAAACTTAGGAAATGAGTAG 1581 0.5066 MGNCCRSPAAVAREDVKSTFSNADHGKPPAAKQKAPMTVLAGVAKENIEDRYLVDRELGRGEFGVTYLCIDRDTRELLACKSISKRKLRTAVDVEDVRREVAIMRHLPDSPSIVSLREACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGERFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKREPWPSISEGAKSLVRQMLEPDPKLRLTAKQVLEHPWLQNAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIADFLSNEEVEDIKDMFKKMDNDNDGIVSIEELKAGFRNFGSQLAESEIQLFIEAVDNNGKGTLDYGEFVAVSLHLKRMANDEHLRKAFSYFDKDGNGYIEPDELRNALMEDGADDCTDVANDIFQEVDTDKDGRISYDEFVAMMKTGTDWRKASRHYSRGRFNSLSLKLMKDGSLNLGNE 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01611 526 Pfam EF-hand domain pair 356 416 IPR002048 GO:0005509
Cca07g01611 526 Pfam EF-hand domain pair 428 491 IPR002048 GO:0005509
Cca07g01611 526 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 13 6 507 - -
Cca07g01611 526 SMART serkin_6 52 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01611 526 SMART efh_1 465 493 IPR002048 GO:0005509
Cca07g01611 526 SMART efh_1 393 421 IPR002048 GO:0005509
Cca07g01611 526 SMART efh_1 429 457 IPR002048 GO:0005509
Cca07g01611 526 SMART efh_1 357 385 IPR002048 GO:0005509
Cca07g01611 526 ProSitePatterns EF-hand calcium-binding domain. 366 378 IPR018247 -
Cca07g01611 526 Gene3D - 319 494 - -
Cca07g01611 526 Gene3D Phosphorylase Kinase; domain 1 53 137 - -
Cca07g01611 526 ProSiteProfiles Protein kinase domain profile. 52 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01611 526 Gene3D Transferase(Phosphotransferase) domain 1 138 318 - -
Cca07g01611 526 CDD STKc_CAMK 51 309 - -
Cca07g01611 526 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 507 - -
Cca07g01611 526 ProSitePatterns EF-hand calcium-binding domain. 474 486 IPR018247 -
Cca07g01611 526 Pfam Protein kinase domain 54 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01611 526 ProSiteProfiles EF-hand calcium-binding domain profile. 425 460 IPR002048 GO:0005509
Cca07g01611 526 ProSitePatterns EF-hand calcium-binding domain. 438 450 IPR018247 -
Cca07g01611 526 SUPERFAMILY EF-hand 339 517 IPR011992 -
Cca07g01611 526 CDD EFh 429 491 IPR002048 GO:0005509
Cca07g01611 526 ProSiteProfiles EF-hand calcium-binding domain profile. 461 496 IPR002048 GO:0005509
Cca07g01611 526 ProSiteProfiles EF-hand calcium-binding domain profile. 389 424 IPR002048 GO:0005509
Cca07g01611 526 ProSiteProfiles EF-hand calcium-binding domain profile. 353 388 IPR002048 GO:0005509
Cca07g01611 526 ProSitePatterns Protein kinases ATP-binding region signature. 58 81 IPR017441 GO:0005524
Cca07g01611 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Cca07g01611 526 SUPERFAMILY Protein kinase-like (PK-like) 41 335 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01611 Cca-Chr7 41151752 41159121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01611 1 523 EF-hand Containing Proteins AT1G74740 68.785 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca07g01611 Pkinase 1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01611 K13412 - gmx:100793170 1011.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01611 07 41151752 41159121 Cca07g01611 07 41151752 41159121 ECH