Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01609 ATGGGTTCCACTCGCTCACGTGCCTCTGCCACTGCCAAAGAACGCCTACGCTGGACACAACAACTCCATGATCGCTTTGTGGAGGCTGTAAATAAACTTGGGGGCCCTGATAGCGCAACACCAAAAGGTATATTGAAAGGAATGAAAGCTATGGGTGTTTCGGAATTAAACATTTATCACATCAAAAGCCACTTGCAGAAATACAGGATCTCCAAATTGATTCCAGAGTCCCCCACAAGAGGGAAGCTTGAGAAAAGAAGCATATCTGATATACTGCCAAATTTTAGTTCTATATCTGCTCTTCAGCTAAAAGAAGTCCTTCAAATGCAGACAGAGATGCAAAATCGCTTGAGTGATAAAACAGAGGTTCAGAGAAGCTTGAAGCTAAAAATTGAAGCACAAGGAAAGTACATGGAGAGAATTGGACAAAGTAACCATAGCAAAACAATCATTGAGAAAGCATGCAAGCCTTTTGCTACTACAATTGCTTCTCTGCCTTGTCTTTGTGAGGAATCTGAATCTTTGAGAACACAACTTGAGGAAGAGCACCAATCAAGCAAAAAGCAAAAGATATCAGAAGAGGGTGTTTTTCTAACAAGTTTTGAACATGCATCATCAACCCCACTAGAATTCAACAACCAAACCTGGAATCTTTCTTGGAGCCAGCTTGCAGCAGCATGTCAGTCACCTTTGGTCCCCAATTTCTTATTATGA 714 0.4146 MGSTRSRASATAKERLRWTQQLHDRFVEAVNKLGGPDSATPKGILKGMKAMGVSELNIYHIKSHLQKYRISKLIPESPTRGKLEKRSISDILPNFSSISALQLKEVLQMQTEMQNRLSDKTEVQRSLKLKIEAQGKYMERIGQSNHSKTIIEKACKPFATTIASLPCLCEESESLRTQLEEEHQSSKKQKISEEGVFLTSFEHASSTPLEFNNQTWNLSWSQLAAACQSPLVPNFLL 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01609 237 Pfam MYB-CC type transfactor, LHEQLE motif 102 142 IPR025756 -
Cca07g01609 237 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 13 71 IPR006447 GO:0003677
Cca07g01609 237 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 7 200 IPR044848 GO:0003700
Cca07g01609 237 Pfam Myb-like DNA-binding domain 16 69 IPR001005 -
Cca07g01609 237 SUPERFAMILY Homeodomain-like 12 70 IPR009057 -
Cca07g01609 237 Coils Coil 169 189 - -
Cca07g01609 237 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 7 200 - -
Cca07g01609 237 Gene3D - 12 73 - -
Cca07g01609 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 73 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01609 Cca-Chr7 41102796 41107513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01609 13 159 G2-like Transcription Factor Family AT1G79430 46.711 1.80e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca07g01609 Myb_CC_LHEQLE 1.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01609 - - pvu:PHAVU_008G103100g 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01609 07 41102796 41107513 Cca07g01609 07 41102796 41107513 ECH