Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01608 ATGAACCGCAGGGATTGGCTTTCTCTGGTTGCTGTGCATAGTGATTCCTGGTTGCTCTCTGTATCCTTCTACCTTGGAGCTCGTCTTAATCGCAATGAAAGGAAACGTTTATTTAGTTTAATCAATGATCTTCCATCCGTTTTTGAAGTTGTGACTGACAGGAAACCAGTTAAAGACAAGCCCACTGTGGACAGTGGAAGCAAATCTCGAGGAAGCACCAAGAGGTCAAGTGATGGGCAAGTTAAAAGCAACTCAAAGTTTGCAGATGAGGGCTACGAGGAGGATGAAGATGAGCACAATGAGACACTTTGTGGAAGCTGTGGTGGAAACTACAACGCAGATGAGTTTTGGATCGGGTGTGACATATGCGAGAAGTGGTTCCATGGCAAGTGTGTTAAGATTACCCCTGCAAAGGCTGAGAGCATAAAGCAGTACAAATGTCCATCATGCAGCCTCAGGAGGGGCAGGCCCTAG 474 0.4641 MNRRDWLSLVAVHSDSWLLSVSFYLGARLNRNERKRLFSLINDLPSVFEVVTDRKPVKDKPTVDSGSKSRGSTKRSSDGQVKSNSKFADEGYEEDEDEHNETLCGSCGGNYNADEFWIGCDICEKWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01608 157 SUPERFAMILY FYVE/PHD zinc finger 92 155 IPR011011 -
Cca07g01608 157 Pfam Alfin 1 52 IPR021998 GO:0006355|GO:0042393
Cca07g01608 157 PANTHER CPG BINDING PROTEIN 1 156 IPR045104 GO:0006355|GO:0042393
Cca07g01608 157 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE 1 156 - -
Cca07g01608 157 ProSiteProfiles Zinc finger PHD-type profile. 101 153 IPR019787 -
Cca07g01608 157 MobiDBLite consensus disorder prediction 55 101 - -
Cca07g01608 157 MobiDBLite consensus disorder prediction 66 84 - -
Cca07g01608 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 151 IPR013083 -
Cca07g01608 157 SMART PHD_3 103 151 IPR001965 -
Cca07g01608 157 Pfam PHD-finger 104 151 IPR019787 -
Cca07g01608 157 ProSitePatterns Zinc finger PHD-type signature. 104 150 IPR019786 -
Cca07g01608 157 CDD PHD_AL_plant 103 153 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01608 Cca-Chr7 41097820 41101450 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01608 1 156 Alfin-like Transcription Factor Family AT5G05610 74.522 9.04e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Cca07g01608 Alfin 4.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01608 - - gmx:100782478 302.753