Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01607 ATGGACATGGCTTCCAGTCCCCGCACCGTTGAAGAGATCTTCAAGGACTATAGCGCTAGAAGAACCGCTGTTATTCGCGCTCTCACTCACGATGTTGATGAATTTTACGGCCTCTGTGATCCAGATAAGGATAACTTGTGCCTCTATGGACACCCGAATGAGGCCTGGGAGGTAACTCTGCCGGCCGAGGAAGTTCCGCCAGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGGGATGGCATGAACCGCAGGGATTGGCTTTCTCTGGTTGCTGTGCATAGTGATTCCTGGTTGCTCTCTGTATCCTTCTACCTTGGAGCTCGTCTTAATCGCAATGAAAGGAAACGGTTATTTAGTTTGATCAATGATCTTCCATCCGTTTTTGAAGTTGTGACTGACAGGAAGCCAGTTAAGGACAAGCCAACTGTGGACAGTGGAAGCAAATCTCGGGGAAGCACCAAGAGGTCAAGTGATGGGCAAGTTAAAAGCAACTCAAAGTTTGCGGATGAGGGCTACGAGGAGGATGAAGATGAGCACAATGAAACACTTTGTGGAAGCTGTGGTGGAAATTACAATGCCGATGAGTTTTGGATCGGCTGCGACATATGCGAGAAGTGGTTCCATGGCAAGTGTGTTAAGATTACCCCTGCAAAGGCTGAGAGCATAAAGCAGTACAAATGTCCATCATGCAGCCTCAGGAGGGGCAGGCCCTAG 720 0.4903 MDMASSPRTVEEIFKDYSARRTAVIRALTHDVDEFYGLCDPDKDNLCLYGHPNEAWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVSFYLGARLNRNERKRLFSLINDLPSVFEVVTDRKPVKDKPTVDSGSKSRGSTKRSSDGQVKSNSKFADEGYEEDEDEHNETLCGSCGGNYNADEFWIGCDICEKWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01607 239 SUPERFAMILY FYVE/PHD zinc finger 174 237 IPR011011 -
Cca07g01607 239 SMART PHD_3 185 233 IPR001965 -
Cca07g01607 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 233 IPR013083 -
Cca07g01607 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Cca07g01607 239 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Cca07g01607 239 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 238 - -
Cca07g01607 239 Pfam PHD-finger 186 233 IPR019787 -
Cca07g01607 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Cca07g01607 239 CDD PHD_AL_plant 185 235 IPR044104 -
Cca07g01607 239 MobiDBLite consensus disorder prediction 139 176 - -
Cca07g01607 239 PANTHER CPG BINDING PROTEIN 3 238 IPR045104 GO:0006355|GO:0042393
Cca07g01607 239 MobiDBLite consensus disorder prediction 148 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01607 Cca-Chr7 41091225 41094857 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01607 4 238 Alfin-like Transcription Factor Family AT5G05610 75.424 6.26e-119 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Cca07g01607 Alfin 1.8e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01607 - - gmx:100782478 468.003