Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01606 ATGGCTTCTACACCCCGCACCGTCGAAGAGATCTTCAGGGACTATAGTTCCCGAAGAACTGGTATCATCCGCGCTCTCACTCACGACGTTGATGAATTTTACGGCCTCTGCGATCCAGGCAAGGATAACTTGTGCCTCTATGGACATTCAAATGAGACATGGGAAGTATCTCTTCCATCTGCAGAAGTTCCACCGGAGCTGCCAGAACCAACTCTTGGAATCAATTTTGCAAGGGATGACCTTAGCCGCAAGGACTGGCTCTCTCTTGTTGCTGTGCATAGTGATGCTTGGTTGTTTGGCGTTGCCTTTTACTGTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTGTTTTGTTTGATCAATGACCTTCCCACCATTTTTCAAGTTGTGACTGAGATGAAGCCTATGGACAAGCCCACGGTGGATAGTGGAAGCCAATCTCAAGGAAGCACCAGAAGATCTAGAGATGGACAAAGTATCCCAGTGTCTGTACATGAGGGTTATGATCAGGGGAAAATTGTAATACAATGTGGATGTTGCGGTGGAAATTACAATCCACGTGAATTTTGGATTGGCTGTGATATATGTGAGTGGTGGTACCATGGGACGTGTGTTATGCTTACCCCTGCAAAAGCTGAGACCCTAAAGCAATATAAATGTCCATCGTGCCACTTGAGGCGAGGCAGGTATTAG 696 0.467 MASTPRTVEEIFRDYSSRRTGIIRALTHDVDEFYGLCDPGKDNLCLYGHSNETWEVSLPSAEVPPELPEPTLGINFARDDLSRKDWLSLVAVHSDAWLFGVAFYCGARLNRNERKRLFCLINDLPTIFQVVTEMKPMDKPTVDSGSQSQGSTRRSRDGQSIPVSVHEGYDQGKIVIQCGCCGGNYNPREFWIGCDICEWWYHGTCVMLTPAKAETLKQYKCPSCHLRRGRY 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01606 231 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Cca07g01606 231 Pfam PHD-finger 178 225 IPR019787 -
Cca07g01606 231 SUPERFAMILY FYVE/PHD zinc finger 176 228 IPR011011 -
Cca07g01606 231 SMART PHD_3 177 225 IPR001965 -
Cca07g01606 231 CDD PHD_AL_plant 177 224 IPR044104 -
Cca07g01606 231 MobiDBLite consensus disorder prediction 138 164 - -
Cca07g01606 231 MobiDBLite consensus disorder prediction 141 159 - -
Cca07g01606 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 230 IPR013083 -
Cca07g01606 231 PANTHER CPG BINDING PROTEIN 2 229 IPR045104 GO:0006355|GO:0042393
Cca07g01606 231 ProSitePatterns Zinc finger PHD-type signature. 178 224 IPR019786 -
Cca07g01606 231 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 2 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01606 Cca-Chr7 41072571 41081691 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01606 2 230 Alfin-like Transcription Factor Family AT5G05610 63.983 3.15e-95 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca07g01606 Alfin 2.2e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01606 - - gmx:100793126 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01606 07 41072571 41081691 Cca07g01606 07 41072571 41081691 ECH
Cca07g01606 07 41072571 41081691 Cca01g01893 01 44253068 44260892 PCT
Cca01g01837 01 42905088 42905848 Cca07g01606 07 41072571 41081691 PCT