Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01605 ATGGCTCCGATACCCCGCACCGTTGAAGAGATATTCATAGACTATAGGGCTAGAAGAACTGCTCTTGTTAACGCTCTTACACGTGACGCGGATGAATTTTACAGCCTCTGTGATCCAGGCATGGATAATCTGTGCCTCTTTGGTCATGGGGATGAGAGCTGGGAAGTAGCCCTACCAGCAGAGGAAGTTCCGGCGGAACTCCCTGAGCCAGTTCTTGGAATCAATTTCTTTAGAGATCGCAAAAGCCGCAAGGATTGGTTTTCTTATGTTGCTGTGCACAGTGATTGTTGGTTGCTTGCTGTGGCCTTTTATCTTGCATTCAGACTTGACAAATTCCAAAGGCAACGTTTGTTTAGTTTGATCAATAATCTTCCCTCCGTTTTCGAAGCTGTGACTAAGTGGAATAAATTACGAATTACGAACGTGCCAACCGAGGGTGGTAGTTCAAGCAAATCTACTCAGAAAAACTCTACGAATCTAGAGGCAATAATACAATGTAGAATCTGTGAAGGACATTACAATCCAAATGAATTTTGGATCGGCTGCGATGTATGTGAGTGTTGGTTCCATGGGAAGTGTGTTGATATTACCCCTGAAGAGGCTGAGACCATAGAGCAATATGAATGCCCATCATGCAGCTTGAAGAGTAATACAAGGCCCAGCAGAACTACTAAAGAGCCTAGCTGGATGAAATATTACTGTACAATTTAG 711 0.4374 MAPIPRTVEEIFIDYRARRTALVNALTRDADEFYSLCDPGMDNLCLFGHGDESWEVALPAEEVPAELPEPVLGINFFRDRKSRKDWFSYVAVHSDCWLLAVAFYLAFRLDKFQRQRLFSLINNLPSVFEAVTKWNKLRITNVPTEGGSSSKSTQKNSTNLEAIIQCRICEGHYNPNEFWIGCDVCECWFHGKCVDITPEEAETIEQYECPSCSLKSNTRPSRTTKEPSWMKYYCTI 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01605 236 ProSitePatterns Zinc finger PHD-type signature. 166 212 IPR019786 -
Cca07g01605 236 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 5 216 - -
Cca07g01605 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 220 IPR013083 -
Cca07g01605 236 SMART PHD_3 165 213 IPR001965 -
Cca07g01605 236 SUPERFAMILY FYVE/PHD zinc finger 156 220 IPR011011 -
Cca07g01605 236 Pfam PHD-finger 166 213 IPR019787 -
Cca07g01605 236 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Cca07g01605 236 ProSiteProfiles Zinc finger PHD-type profile. 163 215 IPR019787 -
Cca07g01605 236 PANTHER CPG BINDING PROTEIN 5 216 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01605 Cca-Chr7 41069501 41070703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01605 5 215 Alfin-like Transcription Factor Family AT5G05610 52.609 7.52e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca07g01605 Alfin 2.5e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01605 - - gmx:100793126 253.447