Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01604 ATGAAACCCCTTATTGAACTCACTATAGCAACCAGTCTTCCAATCAAACTCAACTCCACAAACCATCATACTTGGTACAATCAAATCACGCATCTTCTTAAGGCCAATGATCTCTTTGGCTACGTTACTGGTGAAACCGCTTGCCCCCCTCCCAAAACTGGTTCAGAGGGAAATGTTACAACAAATCCAGAATATACTCATTGGCAACGACAAGACCACTTTGTTTTTCTTGCTCTTCTAGGTTCTTGCAGTCCCGATGCTCAAATTGTTATGACCTCTGCAGAATCTTCTGCTGCTGCATGGGACCGACTCAACAAGCAATATGCTAATCGATCCCGCACTCGTATAATGTCCTTGAAGGAACGACTTGCCTCAATATCTAAAGGCACCTCTGGTGTTGCTGACTACCTCCGTTCTATAAGGGTCATTGCCGATGAGCTTGCTCTCATTGGTCATCCCGTTGATGACCTTGATTTGGTGATCACCGCTCTCAATGGTCTTGGCCCTAGTTTTCGCGAGTTCACTGCCTCAATTCGTGCACGTGACTCTCCATTACTATTTGATGAACTATTTGATAAACTCATTGATTTTGAAATCTTCCTCCAACGTGAGGAACGCCAGCAGCAATCTCTTCCAGCCACTGCACATTACACTCAACGCTACAATGCTTCCTCCTCCCGTGGAAAAAGGTCCCAAAACTATCGCAACTCATCATCAGTTCGTAACTCCACTACTTTGCCTTCTGCTGCCTCATCTAATTTATCCAATAACTCATCTCAGCGAGGATCATCATCCTCTCGTTCAGTTCCCACATGCCAATATTGTGATCGAAGAGGCCACACTGCCAAAACTTGCTACCAGCTGCATGGATATCCTTCCAACCATCCACGCCATCAAGCAAACTTAGCTCAACAAGAACCACAGTCCGATCCCAGCTGGTTACTTGACTCGGGTGCTTCACATCATGTCACCAAGGACATTGCAAATCTGTCCCTGGCTGACACGTATCAAGGCCATGATCAACTCTTTGTTGCCAATGGTAAAGATAAGGATAACTTGTGCCTCTATGGACACCCGAATGAGGCCTGGGAGGTAACTCTGCCGGCCGAGGAAGTTCCGCCAGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGGGATGGCATGAACCGCAGGGATTGGCTTTCTCTGGTTGCTGTGCATAGTGATTCTTGGTTGCTCTCTGTATCCTTCTACCTTGGAGCTCGTCTTAATCGCAATGAAAGGCAACGTTTGTTTAGTTTGATCAATAATCTTCCGACCATTTCTGAAGTTGTGGCTAACTGGAAACCAACTACGGAGCAGCCCTCCGAGGGTAGTGCAAGCAAGCATCAGGAAAACACCATGAATGAAGATATGATCATAATACAATGTGGAAGCTGCGCAGGATATTACAATCCACAAGAGTTTTGGATTGGCTGCGATATCTGTGAGTGGTGGTATCATGGGAAGTGTGTTATGATGAACCCTGCAAAGGCTGAGACCCTAAAGCAATATAAATGTCCATCATGCAATTTGAGGAGGGGCAGGTCATAG 1578 0.4613 MKPLIELTIATSLPIKLNSTNHHTWYNQITHLLKANDLFGYVTGETACPPPKTGSEGNVTTNPEYTHWQRQDHFVFLALLGSCSPDAQIVMTSAESSAAAWDRLNKQYANRSRTRIMSLKERLASISKGTSGVADYLRSIRVIADELALIGHPVDDLDLVITALNGLGPSFREFTASIRARDSPLLFDELFDKLIDFEIFLQREERQQQSLPATAHYTQRYNASSSRGKRSQNYRNSSSVRNSTTLPSAASSNLSNNSSQRGSSSSRSVPTCQYCDRRGHTAKTCYQLHGYPSNHPRHQANLAQQEPQSDPSWLLDSGASHHVTKDIANLSLADTYQGHDQLFVANGKDKDNLCLYGHPNEAWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVSFYLGARLNRNERQRLFSLINNLPTISEVVANWKPTTEQPSEGSASKHQENTMNEDMIIIQCGSCAGYYNPQEFWIGCDICEWWYHGKCVMMNPAKAETLKQYKCPSCNLRRGRS 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01604 525 PANTHER CPG BINDING PROTEIN 470 524 IPR045104 GO:0006355|GO:0042393
Cca07g01604 525 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE 470 524 - -
Cca07g01604 525 MobiDBLite consensus disorder prediction 288 311 - -
Cca07g01604 525 SUPERFAMILY FYVE/PHD zinc finger 470 522 IPR011011 -
Cca07g01604 525 SMART PHD_3 471 519 IPR001965 -
Cca07g01604 525 Pfam PHD-finger 472 519 IPR019787 -
Cca07g01604 525 PANTHER CPG BINDING PROTEIN 339 462 IPR045104 GO:0006355|GO:0042393
Cca07g01604 525 ProSitePatterns Zinc finger PHD-type signature. 472 518 IPR019786 -
Cca07g01604 525 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE 339 462 - -
Cca07g01604 525 MobiDBLite consensus disorder prediction 210 272 - -
Cca07g01604 525 MobiDBLite consensus disorder prediction 297 311 - -
Cca07g01604 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 464 525 IPR013083 -
Cca07g01604 525 Pfam gag-polypeptide of LTR copia-type 70 200 - -
Cca07g01604 525 Pfam Alfin 342 441 IPR021998 GO:0006355|GO:0042393
Cca07g01604 525 CDD PHD_AL_plant 471 521 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01604 Cca-Chr7 41061443 41067057 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01604 349 524 Alfin-like Transcription Factor Family AT3G11200 59.804 2.93e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca07g01604 Retrotran_gag_2 2.1e-16 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01604 - - ccaj:109796412 295.819