Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01603 ATGGCTACGAGACCCCGCACCATTGAAGAGATATTCGTAGACTACAGGGCAAGAAGAACTGCTCTTATTCACGCTCTTACTCGTGACGTTGATGAAGTTTTCAACCTCTGTGATTCAGATAAGGAAAACTTATGCCTCTATGGACATTCGGATGAGACCTGGGAAGTAACTCAGCCAACAAAGGAAGTTCAGAGGGATATCCCTGAACCAGTTATTGGAATCAATTTTGATAGGAAGAACCTGAACTTCATTGACTGGCTTTATCTGGTTGCCCTGTTCAGTGAGTCGTGGTTGTTTTCAGTGGCCTTTTACTATGGATATCTTCTTAACAAGAATGAAAGGGAACGTTTATTTAGTTTGATCAATGATCTTCCCACCATTCCTGAAGTTTTGGCTGGCTGGATACAAGTTGAGAACAAGCCCATCCTAGATAGTGGAAGCAACTCCCCACAAAGCACAGAGGGATCTAGTGATGGACAAAATGTAACACATTCATTAAGCAAATTGTCCATCAAGCATAATGAGGCAGGGAAGCAGCCTGAGGAGGGCATGACCATCCACTGA 564 0.4344 MATRPRTIEEIFVDYRARRTALIHALTRDVDEVFNLCDSDKENLCLYGHSDETWEVTQPTKEVQRDIPEPVIGINFDRKNLNFIDWLYLVALFSESWLFSVAFYYGYLLNKNERERLFSLINDLPTIPEVLAGWIQVENKPILDSGSNSPQSTEGSSDGQNVTHSLSKLSIKHNEAGKQPEEGMTIH 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01603 187 MobiDBLite consensus disorder prediction 142 162 - -
Cca07g01603 187 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 3 170 - -
Cca07g01603 187 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Cca07g01603 187 PANTHER CPG BINDING PROTEIN 3 170 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01603 Cca-Chr7 41052942 41055150 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01603 2 169 Alfin-like Transcription Factor Family AT5G05610 50.888 3.74e-48 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01603 - - ccaj:109791717 384.8