Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01602 ATGATGCTTTTCGACGCTGATCAAGTTTACGACCTCTGTGATCCAGATAAACGGGAATGCTTTTGCCTCTATGGACTTTCGGATAAGACTTGGGAAGTAACTGCGCCAGAAGAGCTAGTTCCGACGGAGTTACCTGAGCCAGTTCTTGGAATCAATTTTGGTAAGGAGGGCATGGACCGCACGAAGTGGCTTTATCTTGTTGCCATTCATAGTGATTCGTGGTTGCTTGCTGTGGCCTTTTACAATGGATTTAGTCTTGACTGCGATCAAAGGAAACATTTATTTAATTTGATGAATGATCTTCCCACCGTTGCTGAAGTTGTGGCTGATCACTGGAAACTAGATGATGAGGACAAGTCCACCGAGGATAGTAGAACCAACACTCGAGAAATAACTGATattgaagatgaagaggatgaagatgaggaggatgaagatgaaggggatgaaaatgagggggacggagaggaggaggttgaagatgaGGTTTCTTGTGTTGTGCAAGTTGAAAACAACCCAAAGTTTGCAGATGAAGATGATCAGAATGCAACATATCCATTAAGGAAATTGTCCATCATGCAGCCTGAGGATGAAGATAAGCACAATGAAAATGAAATACTTTGTGAAGGCTGGGGTGCAAATTATGATGGGGGACTTAACAGTATCAGCTTCCACAAACCCTTTGGCTTACTAAATTCGGTGGTGGACATGGCTCCCAAACCCCGCACTGTTAAAGAGATCTTCAAAGACTATAGGGGCAGAAGAACTGCTCTTATTAACGCTCTTACTCGCGATGCCGATCAAGTTTACGATCTCTGTGATCCAGAAAAGGAAAACTTGTGCCTATATGGACATTCGGATGAATCATGGGAAGTATGTTTGCCAGAGGAGCAAGTTCCGACGGATATCCCTGAGCCTGCTCTTGGAATCAATTTTGGTAGGGAAGGCATTAACCGTAGTGATTGGTTTCGTATGGTTGCCATGCATAGTGATTCGTGGTTGGTTTGCGTAGCCTATTACTTTGGATTTAGCCTTAACAGCAATGAAAGGGCCCAATTATTTAATTTGATGAATAATCTTCCCAACATTTCTGAAGTTGTGGCTAACTGGAAACCAGATGGGGACAAGTCTACCAAGAATAGTGGTAACAACTCTCGGGGAAATACCCAGATCTCTAATGTTGTGGAAGATGAAAGGCGTCCCAAAGTTTGCAGACGAGGGTTGTGA 1227 0.4034 MMLFDADQVYDLCDPDKRECFCLYGLSDKTWEVTAPEELVPTELPEPVLGINFGKEGMDRTKWLYLVAIHSDSWLLAVAFYNGFSLDCDQRKHLFNLMNDLPTVAEVVADHWKLDDEDKSTEDSRTNTREITDIEDEEDEDEEDEDEGDENEGDGEEEVEDEVSCVVQVENNPKFADEDDQNATYPLRKLSIMQPEDEDKHNENEILCEGWGANYDGGLNSISFHKPFGLLNSVVDMAPKPRTVKEIFKDYRGRRTALINALTRDADQVYDLCDPEKENLCLYGHSDESWEVCLPEEQVPTDIPEPALGINFGREGINRSDWFRMVAMHSDSWLVCVAYYFGFSLNSNERAQLFNLMNNLPNISEVVANWKPDGDKSTKNSGNNSRGNTQISNVVEDERRPKVCRRGL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01602 408 MobiDBLite consensus disorder prediction 133 163 - -
Cca07g01602 408 MobiDBLite consensus disorder prediction 371 400 - -
Cca07g01602 408 MobiDBLite consensus disorder prediction 116 163 - -
Cca07g01602 408 MobiDBLite consensus disorder prediction 116 132 - -
Cca07g01602 408 Pfam Alfin 243 368 IPR021998 GO:0006355|GO:0042393
Cca07g01602 408 Pfam Alfin 4 109 IPR021998 GO:0006355|GO:0042393
Cca07g01602 408 PANTHER CPG BINDING PROTEIN 239 390 IPR045104 GO:0006355|GO:0042393
Cca07g01602 408 PANTHER CPG BINDING PROTEIN 5 215 IPR045104 GO:0006355|GO:0042393
Cca07g01602 408 MobiDBLite consensus disorder prediction 374 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01602 Cca-Chr7 41005478 41011636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01602 241 403 Alfin-like Transcription Factor Family AT5G05610 53.049 5.23e-47 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01602 - - ccaj:109792629 383.259