Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01601 ATGGGCGTGGACTACTACAAGCTCCTTCAGGTTGATAGAAACGCAAAAGATGAGGATCTCAAGAAAGCATATCGTAGGCTAGCCATGAAGTGGCATCCTGATAAGAACCCTAACAACAAGAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCTGAAGCATATGATGTTTTGAGTGATCCACAGAAGCGAGCAGTGTATGATCAGTATGGTGAGGAGGGGTTGAATGGGGTGCCACCTGGCGCCGGTGGTTTTTCTGGTGGCAGCGACGGTGGGCCAACGACATTCCGGTTCAACCCTAGAAGTGCAGATGATATATTTTCGGAGTTTTTCGGGTTTTCGAGTCCCTTTGGTGGGGGAATGGGGGACATGGGTGGCCGTGCTGGTGGCTCAGGATTTTCCAGGGGTGGCCCATTTGGTGAAGATATTTTTGCTCAATTTAGGAGTGGAGCTGGAGAGGGCTCTGGCCATATGCCAAGGAAAGGTGCAGCAATTGAGAAAACATTGCATTGTAGTTTGGAGGATTTGTATAAAGGGACTACAAAAAAGATGAAGATTTCAAGGGATGTTAGTGACGCCACTGGAAGACCCACCACAGTAGAGGAAATCCTTACAATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACTTTTCCAGAAAAGGGAAATGAACAGAGAGGAGTTATCCCTGCAGACCTTGTCTTTATTATTGACGAGAAGCCTCATAGCATCTTTAAGAGGGACGGCAATGATCTTGTTGTAACCCAGAAGGTATCCCTCGTAGAGGCCTTGACGGGTTACACAGTGCAGCTGACAACCCTTGATGGGCGTAATCTTACAATCCCCGTCAACTCCATTATTAGTCCGACATATGAAGAAGTTGTCAAAGGAGAGGGTATGCCTATTCCTAAAGAACCTTCCAAAAGGGGGAACTTGAGAATCAAGTTCAACATCAAGTTTCCCTCCAGGCTCACATCAGAACAGAAAAGCGGCCTTAAGCGGTTATTGACATCTCCGTGA 1023 0.4633 MGVDYYKLLQVDRNAKDEDLKKAYRRLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLNGVPPGAGGFSGGSDGGPTTFRFNPRSADDIFSEFFGFSSPFGGGMGDMGGRAGGSGFSRGGPFGEDIFAQFRSGAGEGSGHMPRKGAAIEKTLHCSLEDLYKGTTKKMKISRDVSDATGRPTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPADLVFIIDEKPHSIFKRDGNDLVVTQKVSLVEALTGYTVQLTTLDGRNLTIPVNSIISPTYEEVVKGEGMPIPKEPSKRGNLRIKFNIKFPSRLTSEQKSGLKRLLTSP 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01601 340 Gene3D - 243 323 - -
Cca07g01601 340 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 338 - -
Cca07g01601 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 246 331 IPR008971 GO:0006457|GO:0051082
Cca07g01601 340 SUPERFAMILY Chaperone J-domain 3 124 IPR036869 -
Cca07g01601 340 CDD DnaJ 4 59 IPR001623 -
Cca07g01601 340 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Cca07g01601 340 PRINTS DnaJ domain signature 6 24 IPR001623 -
Cca07g01601 340 PRINTS DnaJ domain signature 24 39 IPR001623 -
Cca07g01601 340 PRINTS DnaJ domain signature 42 62 IPR001623 -
Cca07g01601 340 PRINTS DnaJ domain signature 62 81 IPR001623 -
Cca07g01601 340 Gene3D DnaJ domain 3 122 IPR036869 -
Cca07g01601 340 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 338 - -
Cca07g01601 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 165 243 IPR008971 GO:0006457|GO:0051082
Cca07g01601 340 Pfam DnaJ C terminal domain 164 322 IPR002939 -
Cca07g01601 340 CDD DnaJ_C 164 325 - -
Cca07g01601 340 Gene3D - 162 241 - -
Cca07g01601 340 SMART dnaj_3 3 62 IPR001623 -
Cca07g01601 340 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Cca07g01601 340 Pfam DnaJ domain 4 67 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01601 Cca-Chr7 40994616 40998823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01601 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 3.35e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01601 K09510 - gmx:100818358 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01601 07 40994616 40998823 Cca07g01601 07 40994616 40998823 ECH
Cca07g01601 07 40994616 40998823 Cca01g01892 01 44233508 44237141 PCT