Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01587 ATGGGTTCTCATGAGACCGAGCCATGGCTTCTGGAGAACGGGAACCCGAAGGTGTTGACGAGGGAGATGAGGCATGGACGCACTGCACACAGCAGGTCCTCCATGTCCTTGCGCAAGAAGTCTGACAGAACCCTTGTGCAGAAGATTCGCTGTGCCTTACTCCGAGACCTCCTTTCCAACGTCCAAGAGGTTATTCTTGGCACCAAGCTCTCCATTCTCATCCCCGCCGTTCCCCTTGCCATTGCTGCTGAGATCTATGGCCTTGCAAGACCTTGGGTTTTTATATTGAGCTTACTTGGGCTTACCCCACTTGCTGAACGTGTGAGCTTCATCACAGAACAAGTTGCTTTCTACACTGGTCCCACAGTTGGAGGACTTCTGAATGCTACATGCGGGAATGTTACTGAGCTCATCATAGCAATATTTGCCCTTAGCAGTAACAAGATTGCTGTGGTCAAGTATTCTCTGTTGGGTTCTATTCTTTCAAACCTTCTTCTGGTTCTTGGGACCTCTCTATTATGTGGTGGCATTGCAAACCGTGGAGTGGAGAAAAAATATGATAGAAGACAAGCAGATGTGAACTCTCTTATGCTATTGTTGGGATTGTTGTGCTACTTGCTTCCAATGCTGTTCAACTATAGTGCTGCCTCACCTGCTCTCACAGCAGACCCTTCACTCTACTTGTCAAGAGCTTCTAGCATTGTCATGTTGATTGCATATTTTGCTTACATTGTCTTTCAACTTTGGACACACAGGGAGTTATTTGAAGCTGAAGATGAGGATGAAGATGGTAACAAAGATTCAGAAGAACAAGCTGTGATTGGATTATGGAGTGGCATTGCCTGGCTAGTTGGGATGACTGTATTCATTGCTTTGTTGTCTGAGTATGTGGTGGATACAATTGAGGATGCATCAGATTCATGGGGTTTGTCTGTGAGCTTCCTCAGCATAATCTTGCTACCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGACATCACATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGTGGTCCCTTTATGTGTCACCGTTGCTTGGATAATGGGTGTCAAAATGGACCTGAACTTCAACCTCCTAGAGACAGGTTCTGTTGCTTTGGCAATAATAGTCACAGGCTTCACTTTACAGGATGGTACTTATCACTATATGAAAGGCCTTGTTCTCCTGCTATGCTACGTAGTTATTGGTGCTTGCTTCTTCGTACAAAGAACACCCTTGAACCAAGCTGATGTTACTAACTTCACGCTTAAACCAGCCACTAATGCAGTTTTAGGCGCTTAG 1347 0.4536 MGSHETEPWLLENGNPKVLTREMRHGRTAHSRSSMSLRKKSDRTLVQKIRCALLRDLLSNVQEVILGTKLSILIPAVPLAIAAEIYGLARPWVFILSLLGLTPLAERVSFITEQVAFYTGPTVGGLLNATCGNVTELIIAIFALSSNKIAVVKYSLLGSILSNLLLVLGTSLLCGGIANRGVEKKYDRRQADVNSLMLLLGLLCYLLPMLFNYSAASPALTADPSLYLSRASSIVMLIAYFAYIVFQLWTHRELFEAEDEDEDGNKDSEEQAVIGLWSGIAWLVGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDITLGVALGSATQIAMFVVPLCVTVAWIMGVKMDLNFNLLETGSVALAIIVTGFTLQDGTYHYMKGLVLLLCYVVIGACFFVQRTPLNQADVTNFTLKPATNAVLGA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01587 448 Pfam Sodium/calcium exchanger protein 92 249 IPR004837 GO:0016021|GO:0055085
Cca07g01587 448 Pfam Sodium/calcium exchanger protein 280 417 IPR004837 GO:0016021|GO:0055085
Cca07g01587 448 Gene3D - 265 421 IPR044880 -
Cca07g01587 448 Gene3D - 121 262 IPR044880 -
Cca07g01587 448 TIGRFAM caca2: calcium/proton exchanger 56 422 - -
Cca07g01587 448 TIGRFAM cax: calcium/proton exchanger 73 422 IPR004798 GO:0006816|GO:0015369
Cca07g01587 448 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 3 434 - -
Cca07g01587 448 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 3 434 IPR004713 GO:0006812|GO:0008324|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01587 Cca-Chr7 40761283 40765503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01587 6 430 Antiporters AT2G38170 68.203 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01587 K07300 - gmx:100779440 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01587 07 40761283 40765503 Cca07g01587 07 40761283 40765503 ECH
Cca07g01587 07 40761283 40765503 Cca01g01885 01 44094661 44099436 PCT