Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01582 ATGTTTTTGGTATTTTTCTTGCTGAAGGGGTTCAAGAGAAAAAATGACTTTTACAATTGCAGATTTTTTTGTTTGACCATTAATTATGCTGCAGATGACTATGTTTTGGTTGAGAAATTTAGCCTTGGGAAGTACAATTTTGCACATGGTGATGTGGTAGTTTTCCGCTCTCCACTGAATCACAAGGAGACACATATAAAGAGAATAGCTGCATTACCTGGTGAATGGTTTGGCACTTATCATAACAATGATGTGGTTCATATTCCTCTAGGACATTGTTGGGTTGAGGGAGACAACATAGCTTCTAGCATGGATTCAAAGTCATTTGGACCAATTCCTTTGGGCCTAATTCGGGGAAGGGTTACCCATGTTGTGTGGCCTCCTCAAAGAATAGGAGCTGTCAAGAGTATTCCACCACAAGGATTAGCTTCTTTTTAG 438 0.395 MFLVFFLLKGFKRKNDFYNCRFFCLTINYAADDYVLVEKFSLGKYNFAHGDVVVFRSPLNHKETHIKRIAALPGEWFGTYHNNDVVHIPLGHCWVEGDNIASSMDSKSFGPIPLGLIRGRVTHVVWPPQRIGAVKSIPPQGLASF 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01582 145 Gene3D Umud Fragment, subunit A 25 136 - -
Cca07g01582 145 Pfam Signal peptidase, peptidase S26 30 75 IPR019533 GO:0004252|GO:0006465
Cca07g01582 145 Pfam Signal peptidase, peptidase S26 82 126 IPR019533 GO:0004252|GO:0006465
Cca07g01582 145 SUPERFAMILY LexA/Signal peptidase 31 134 IPR036286 -
Cca07g01582 145 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 30 139 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Cca07g01582 145 CDD S26_SPase_I 33 121 IPR019533 GO:0004252|GO:0006465
Cca07g01582 145 PRINTS Bacterial leader peptidase 1 (S26A) family signature 88 107 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cca07g01582 145 PRINTS Bacterial leader peptidase 1 (S26A) family signature 65 77 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01582 Cca-Chr7 40688715 40691688 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01582 29 138 MADS-box Gene Family AT1G29960 34.483 5.38e-18 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01582 K09648 - gmx:100527429 214.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01582 07 40688715 40691688 Cca07g01582 07 40688715 40691688 ECH