Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01564 ATGTTTTGCAACTGGTTTGGTACTTTGAATTGGTGTGGAGGAAGGGATGATGATCCTGCAGATCAGCAAGATGAACAAGTTATTGGAACTAGAAAGTTTAGCTATAACTCATTGAGATCAGCAACGGGAGATTTTCATCCTTCAAGCAAAATCGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTGAGGGATGGTACTCAAGTTGCTATCAAGTCTCTTTCTGTAGAGTCTAAACAAGGAACTCATGAATTTATGACAGAAATTGATATGATATCAAATATACGGCATCCGAATCTTGTGGAACTGATTGGCTGTTGTGTTGAGGGTAGTCATCGAATATTGGTTTATGAATTCTTGGAGAACAATAGCCTTGCGAGTTCTTTGCTCGGTTCAAAAGGTAAATATGTTGCTCTGGATTGGCCAAAGAGGGCTGCTATTTGTCGTGGCACAGCTTCTGGTCTAAGTTTTCTTCATGAAGAAGCTCAGCCAAACATTGTTCACAGAGATATCAAGGCCAGCAACATATTGCTGGATGGGAATTTCTATCCGAAAATCGGGGATTTTGGCCTTGCAAAACTTTTTCCTGACAATGTCACCCACGTTAGTACTCGAGTTGCAGGAACTGTGGGATATCTTGCACCAGAATATGCACTTTTGGGACAACTTACGAAGAAGGCAGACATATACAGTTTTGGGATTCTCATGCTTGAAATAATCAGTGGGAAAAGTAGCAGCATAGCTGCATTTGATGAGGATTTTTTGGTTCTAGTGGAATGGGCTTGGAAGCTGAAAGAAGAAAACAGGCTTCTAGACCTTGTTGATTCAGAACTAAGTGAATATGATGAGAGCGAGGTGTATCGGTTCCTTATAGTGGCTCTATTTTGCACCCAATCAGCTGCTCAGCACAGACCAAGCATGAAGCAAGTACTGGAAATGCTTTCCAAGGAAGTTCATCTTAATGAGAAGGCATTGACTGAGCCCGGAATATATAGATGGCACAGCACAGGAAAGAAAGGTGGTTCTTTGAATGAGACATCATCTTCTCAAGCAGTCAAGCACAAAAAAACTGAAAATCCACATGAAGCAGCAACTTCAACTCTCTTTAGTGGCACAGATATTGTGACAGAGATGCTTCCAAGGTGA 1149 0.416 MFCNWFGTLNWCGGRDDDPADQQDEQVIGTRKFSYNSLRSATGDFHPSSKIGGGGYGVVYKGVLRDGTQVAIKSLSVESKQGTHEFMTEIDMISNIRHPNLVELIGCCVEGSHRILVYEFLENNSLASSLLGSKGKYVALDWPKRAAICRGTASGLSFLHEEAQPNIVHRDIKASNILLDGNFYPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADIYSFGILMLEIISGKSSSIAAFDEDFLVLVEWAWKLKEENRLLDLVDSELSEYDESEVYRFLIVALFCTQSAAQHRPSMKQVLEMLSKEVHLNEKALTEPGIYRWHSTGKKGGSLNETSSSQAVKHKKTENPHEAATSTLFSGTDIVTEMLPR 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01564 382 SMART serkin_6 45 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01564 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Cca07g01564 382 SUPERFAMILY Protein kinase-like (PK-like) 26 315 IPR011009 -
Cca07g01564 382 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524
Cca07g01564 382 Gene3D Phosphorylase Kinase; domain 1 16 120 - -
Cca07g01564 382 ProSiteProfiles Protein kinase domain profile. 45 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01564 382 Gene3D Transferase(Phosphotransferase) domain 1 121 329 - -
Cca07g01564 382 MobiDBLite consensus disorder prediction 337 364 - -
Cca07g01564 382 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 24 362 - -
Cca07g01564 382 Pfam Protein tyrosine and serine/threonine kinase 48 315 IPR001245 GO:0004672|GO:0006468
Cca07g01564 382 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 24 362 - -
Cca07g01564 382 CDD STKc_IRAK 64 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01564 Cca-Chr7 40347874 40360981 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01564 33 330 Receptor kinase-like Gene Family AT1G56120 53.691 2.75e-106 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca07g01564 PK_Tyr_Ser-Thr 5.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01564 - - gmx:100785766 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01564 07 40347874 40360981 Cca07g01564 07 40347874 40360981 ECH