Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01549 ATGCAGAAATATGATGCAGTTGTTGGTGATGTATCGATAGTGTCCGCACGTTATGAATATGCTTCATTCACTCAGCCCTATACTGATACAGGACTGGTGATGATTGTTCCTGTTAAATCAAAGACACGCAATAGAACATGGCTATTCCTGAAGCCTTTCACAATGCACATGTGGATTCTAATATTGGTCATCATTTTCTATAATGGCTTTGTTGTATGGTTGATTGAAAGAAACCACTGCCCTGAACTTAAGGGCCCTATTCTGCATCAAACCACAACGGTGCTGTGGTTGGCTTTCTGTTCTATGTTCTCTTTGAATGGGGGCAGGTTGCATAGCAATTTATCAAGGTTGGCAATGGTGGTCTGGCTTTTTGTGGCTCTAATCATTTCAGAGACTTACACTGCTAACCTTGCCAGCATGTTGACTGTTGAACAGTTTGAACCAACAGTTGACAGCCTTCAAAAGCTAAAGAAAAGCAATGCCACGGTAGGATGTGATACAGGATCCTACTGTGAAAGATATCTCCAAGATGCATTGGGCATGAATGCAAAAAACATCAAGCCATTTGATTCACAGGAGAGCTATGCTGATGCCCTAAAAAAGAAAGAAATAGCAGCTGTCTTCATTGATGTTCCTGGGTCCAAACTTTTCCTTGCAAAGCACTGTAAAGGGTTTGTTCAAGCAGGGCCTACATACAAGATTGGAGGATATGGATTTGCCAATATGTTCAAAACTGGAAATGAGTTCAGCGACTTTCACTACAATTCTACAAAGGTCACCATCACACTCACCTGA 795 0.4151 MQKYDAVVGDVSIVSARYEYASFTQPYTDTGLVMIVPVKSKTRNRTWLFLKPFTMHMWILILVIIFYNGFVVWLIERNHCPELKGPILHQTTTVLWLAFCSMFSLNGGRLHSNLSRLAMVVWLFVALIISETYTANLASMLTVEQFEPTVDSLQKLKKSNATVGCDTGSYCERYLQDALGMNAKNIKPFDSQESYADALKKKEIAAVFIDVPGSKLFLAKHCKGFVQAGPTYKIGGYGFANMFKTGNEFSDFHYNSTKVTITLT 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01549 264 SUPERFAMILY Periplasmic binding protein-like II 2 247 - -
Cca07g01549 264 Pfam Bacterial extracellular solute-binding proteins, family 3 3 240 IPR001638 -
Cca07g01549 264 Gene3D - 1 45 - -
Cca07g01549 264 Pfam Ligand-gated ion channel 55 208 IPR001320 GO:0015276|GO:0016020
Cca07g01549 264 PANTHER GLUTAMATE RECEPTOR 3 239 - -
Cca07g01549 264 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 3 239 - -
Cca07g01549 264 Gene3D - 46 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01549 Cca-Chr7 40176012 40177739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01549 4 243 Ion Channels AT4G35290 38.333 5.81e-53 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01549 - - gmx:100776939 411.379