Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01548 ATGATGGAGGGAAAAGATGAGGATGTGAGAGTTGGAGCCAACAGGTATGGAGAGAGGCAAGCAATAGGAACAGCTGCACAGACACAAGATAGCAGAGACTACAGAGAGGCACCACCAGCTCCATTGTTTGAGGCTAAGGAGTTAACATCATGGTCTTTCTTCAGAGCAGGCATAGCAGAATTTGTGGCAACATTCTTGTTTCTTTATGTCACTGTTTTGACAGTTATGGGTGTGGCAAAATCTCCCAGCAAGTGCTCCACTGTGGGGGTCCAAGGCATTGCTTGGTCTTTTGGTGGCATGATCTTTGCACTTGTCTATTGCACTGCTGGTATCTCAGGGGGTCACATTAACCCAGCTGTGACATTTGGGCTGTTCTTGGCACGCAAGTTATCTCTCACTAGGACAGTCTTTTACATAATAATGCAGTGCTTGGGAGCTATATGTGGTGCTGCTGTGGTCAAGGGATTCCAATCAAACCAATATGAGAGGCTTGGTGGTGCTGCCAACATTCTCAATAAAGGTTACTCCAAAGGTGATGGCCTTGGAGCAGAGATTGTTGGCACATTTATTCTTGTTTACACTGTTTTCTCTGCCACAGATGCCAAGAGAAATGCTAGAGACTCGCATGTTCCTATTTTGGCTCCATTGCCTATTGGTTTTGCTGTCTTTCTGGTGCATTTGGCTACAATTCCTATCACTGGGACTGGCATCAACCCTGCTAGAAGTTTAGGTGCAGCCCTTGTATACAACAAGGACCAAGCTTGGGATAACCATTGGATCTTCTGGGTAGGGCCTTTTATTGGGGCAGCCCTTGCAGCTTTGTATCATCAGATAGTGATCAGGGCCATTCCTTTCAAGTCAAAATGA 867 0.4602 MMEGKDEDVRVGANRYGERQAIGTAAQTQDSRDYREAPPAPLFEAKELTSWSFFRAGIAEFVATFLFLYVTVLTVMGVAKSPSKCSTVGVQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRTVFYIIMQCLGAICGAAVVKGFQSNQYERLGGAANILNKGYSKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALVYNKDQAWDNHWIFWVGPFIGAALAALYHQIVIRAIPFKSK 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01548 288 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g01548 288 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g01548 288 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g01548 288 PRINTS Major intrinsic protein family signature 183 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g01548 288 PRINTS Major intrinsic protein family signature 219 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g01548 288 PRINTS Major intrinsic protein family signature 259 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g01548 288 CDD MIP 55 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g01548 288 SUPERFAMILY Aquaporin-like 46 281 IPR023271 -
Cca07g01548 288 PANTHER PLASMA MEMBRANE INTRINSIC PROTEIN 2 288 - -
Cca07g01548 288 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 288 IPR034294 -
Cca07g01548 288 Pfam Major intrinsic protein 47 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g01548 288 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Cca07g01548 288 TIGRFAM MIP: MIP family channel proteins 59 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g01548 288 Gene3D Glycerol uptake facilitator protein. 40 287 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01548 Cca-Chr7 40129847 40132790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01548 2 288 Major Intrinsic Protein MIP AT4G23400 82.927 1.31e-173 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01548 K09872 - gmx:100809467 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01548 07 40129847 40132790 Cca01g01843 01 43042340 43045729 PCT