Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01544 ATGTTCTTCATATTTATTCCAATTCTTCAGTCCATGAAGTTTCTAACTGTGATGTGGTTTTGTGCATTTATAATGGCCACTTCATATTCTCTCCATGCTACTACTGCATCCTCTGCTTCTCTCACACTTCAACGCAATGAAGCAAATTCTTTGCTAAAGTGGAAAGCAAGCCTTGACAACCAAAGTCAAATTTTGCTATCTTCATGGGGTGGCAATAGTCCTTGCAATTGGCTTGGAGTTGCTTGTGACCACTTTGGATCGATCTGCAACATAAATCTTACAGATATTGGATTAAGTGGTACGCTTCAAACTCTCAACTTTTCATCACTTCCAAACATCCTCACTCTAGATATGAGTAATAACTCCTTGCACGGAAGTATCCCTTCCCAAATTGAGGTGTTGTCCAAACTCACTCATCTAGATTTAAGTGACAATAATTTCTCCGGACCAATTCCATATCAAATAACTCAATTGGCCAGTCTTCAAAAATTATATTTGTCACATAATGTTTTCAATGGTTCTATTCCTCGAGAAATAGATGAATTAAGGAATTTGAGAGAGCTTCAAATTGAATTTACCAATCTCACAGGGACTATCCCAAATTCTATTGGAAATTTATCCTTTTTGTCGTATCTTTCTTTTTGGAATTGCAATCTCACAGGGTCTATCCCAATTTCAATAGGAAAGTTGATCAATTTGTATTATCTAGATTTTACAGGTAACAAACTTTGTGGACATATTCCTAATGAAATTGGGAATTTGTCAAACTTAAAGTATTTGTGGCTCGGAAGTAATAACTTCTATGGTCCTATTCCTCAAGAAATAGGGAAGTTGCAGAGCCTAGAGATTCTACATGCTCAACACAACAATATCTATGGCCACGTTCCTGTGGAAATTGGGATGTTACTCAACTTAACAGATTTATGGCTTGCAAACAATAATCTTTCGGGTTCTATTCCTCGAGAAATTGGAAAGCTGACAAATCTGTATATTCTTGATTTGACGAATAACAGTTTCTCAGGTACAATCCCTCCTACAATTGGAAATTTGAGCAGTTTATCACTCTTTTACCTTTATGGAAACCATCTATCTGGTTCCATTCCTAATGAAGTGGGAAATCTCCATTCTCTTGTCACAATCCAATTGTTAGACAATAATCTATCTGGGCCAATCCCATCTTCCATAGGCAGATTGATCAATTTGGAGTCTATTCGCCTTAATGGAAACAAACTCTCAGGATCAATTCCTTTTGCTATTGGAAACTTGACAAAGCTCACCAACCTTCTTTTATTCTCAAATAATCTCGGTGGAAAAATTCCAGTAGAAATGAACATGCTAAGCAACTTGGAAAATTTGCAATTGTATGAAAATAATTTCATAGGTCATTTGCCTCACAACATTTGCATTAGTGGGAAGTTGATGAAGTTTACTGCTAACAGTAACTACTTCACTGGACCGATACCAAAGAGTTTTAAGAATTGCACCAGCCTTAGAAGAGTTTGGCTTCAACAAAACCAGTTGACTGGAAATATAACAGATGATTTTGGTGTCTATCCAAATTTGGATTACATAGATTTGAGTGAAAATAACTTTTATGGCCATCTTTCTCCAAAATGGGGACAGTGCCTTAATCTCTCAAGCTTCAAAATCTCCAACAATAATTTATCAGGCAGTATTCCACTGGAATTGAGTCAGGCAACCAATTTACATGTACTTCACCTATCTTCGAACCATCTTATAGGAGGCATACCAAAAGATTTAGGTAAGTTGACATACTTGTTTGATCTCTCTCTTGATCACAATAATCTTTCAGGAATGGTCCCTGTACAAATAGCATCTTTGCAAGATCTTGAAACATTGAAGCTTGGTGCGAATAATTTTACAGGCTCAATTCCAAGCCAACTTGGCAATTTGGTCAAGTTGTTACATTTGAATTTGAGCCAAAATAAATTTGGGGAAAGTATTCCATCTGAGCTTGGTAAACTAACCTATCTTCAAAGTCTTGATCTTAGCATGAACTTTTTGAGTGGAAAAATACCACCAATGCTAGAGGGGTTGAAAAGCTTAGAAACACTGAATCTCTCGCACAATAATCTTTCGGGCGATCTCTCCAGCCTCAATGAGATGGTAAGCTTGATATCAGTTGATATATCATACAACCAATTGCAGGGTTCACTCCCTAACATTCGAGCCTTCAAAATTGCTACAATTGAAACATTAAGAAATAATAAACACTTGTGTGGCAATATCTCTGGCTTGGAACCATGCCTAACATCAAGTGTCAAATCTCATAATCATAAGACTAGTAAAGTCATATTGATACTTTTACCCATTGGTTTAGGCACTTTTATACTAGCATTATTTGCCTATGGAGTCTCATATCATCTTTGTCAAACTTCAAAGACCAAAGAAAACAAGGATGCACAACCACCTGTCGATAATCTTTTTGCAATATGGAGTTATGATGGGAAAATGTTGTATGAGAACATAGTTGAAGCCACAGAAGAGTTTGACAATAAACATCTCATTGGAGTTGGAGGACAAGGTAGTGTTTTCAAAGCAAAATTGCACACAGGTCAAATTGTTGCTGTGAAGAAACTCCATGCAGTCCAAAATGAAGAAATCTCCAATGTTAAAGTTTTAACAAGTGAAATTCAAGCTTTGACAGAAATTCGGCATCGTAACATTGTGAAGTTATATGGGTTTTGTTCTCATTCACAATTCTCATTTTTAGTATTCGAGTTCTTGGAAAATGGGAGTGTGGATAAGATTTTAAAAGATGATGAACAAGCAATTGCATTTGATTGGAACAAGAGGACTAATGCCATTAAAGGTGTAGCAAGTGCTTTAAGCTATATGCATCATGATTGTTCACCTCCAATTGTTCATCGAGATATATCAAGCAAAAATGTTCTTTTAGATTTGGAGTATGTGGCTCATGTCTCAGATTTTGGAACAGCTAAGCTTCTTAATCCTGATTCAACCAATTGGACCTCATTCGTTGGCACATTTGGATATGCAGCTCCAGAACTTGCATTCACAATGGAAGTAAATGAAAAATGCGATGTGTATAGCTTTGGGATTTTAGCATTGGAAATACTTTTTGGAGAGCACCCTGGAGATTTTATAACTTCATTGTTAACATCTTCATCAAATGCCATAAGCTCAAAACTTGATATTCCTTTATTAATGGGTAAGTTAGATCAACGTCTTCCTTATCCTATAAATCCTATTGCAGAGGAGATAGTTTTGACTTTGGGGATAACAAATGCTTGCTTGATTGAAAACCCCCATTCTCGCCCTACCATGGAACAAGTGGCCAAGGTGCTTGCGTAG 3336 0.3657 MFFIFIPILQSMKFLTVMWFCAFIMATSYSLHATTASSASLTLQRNEANSLLKWKASLDNQSQILLSSWGGNSPCNWLGVACDHFGSICNINLTDIGLSGTLQTLNFSSLPNILTLDMSNNSLHGSIPSQIEVLSKLTHLDLSDNNFSGPIPYQITQLASLQKLYLSHNVFNGSIPREIDELRNLRELQIEFTNLTGTIPNSIGNLSFLSYLSFWNCNLTGSIPISIGKLINLYYLDFTGNKLCGHIPNEIGNLSNLKYLWLGSNNFYGPIPQEIGKLQSLEILHAQHNNIYGHVPVEIGMLLNLTDLWLANNNLSGSIPREIGKLTNLYILDLTNNSFSGTIPPTIGNLSSLSLFYLYGNHLSGSIPNEVGNLHSLVTIQLLDNNLSGPIPSSIGRLINLESIRLNGNKLSGSIPFAIGNLTKLTNLLLFSNNLGGKIPVEMNMLSNLENLQLYENNFIGHLPHNICISGKLMKFTANSNYFTGPIPKSFKNCTSLRRVWLQQNQLTGNITDDFGVYPNLDYIDLSENNFYGHLSPKWGQCLNLSSFKISNNNLSGSIPLELSQATNLHVLHLSSNHLIGGIPKDLGKLTYLFDLSLDHNNLSGMVPVQIASLQDLETLKLGANNFTGSIPSQLGNLVKLLHLNLSQNKFGESIPSELGKLTYLQSLDLSMNFLSGKIPPMLEGLKSLETLNLSHNNLSGDLSSLNEMVSLISVDISYNQLQGSLPNIRAFKIATIETLRNNKHLCGNISGLEPCLTSSVKSHNHKTSKVILILLPIGLGTFILALFAYGVSYHLCQTSKTKENKDAQPPVDNLFAIWSYDGKMLYENIVEATEEFDNKHLIGVGGQGSVFKAKLHTGQIVAVKKLHAVQNEEISNVKVLTSEIQALTEIRHRNIVKLYGFCSHSQFSFLVFEFLENGSVDKILKDDEQAIAFDWNKRTNAIKGVASALSYMHHDCSPPIVHRDISSKNVLLDLEYVAHVSDFGTAKLLNPDSTNWTSFVGTFGYAAPELAFTMEVNEKCDVYSFGILALEILFGEHPGDFITSLLTSSSNAISSKLDIPLLMGKLDQRLPYPINPIAEEIVLTLGITNACLIENPHSRPTMEQVAKVLA 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01544 1111 SUPERFAMILY RNI-like 90 435 - -
Cca07g01544 1111 Gene3D Ribonuclease Inhibitor 474 765 IPR032675 -
Cca07g01544 1111 SUPERFAMILY L domain-like 464 734 - -
Cca07g01544 1111 Pfam Protein kinase domain 838 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01544 1111 SUPERFAMILY Protein kinase-like (PK-like) 821 1110 IPR011009 -
Cca07g01544 1111 Pfam Leucine rich repeat 136 195 IPR001611 GO:0005515
Cca07g01544 1111 ProSitePatterns Tyrosine protein kinases specific active-site signature. 961 973 IPR008266 GO:0004672|GO:0006468
Cca07g01544 1111 Gene3D Phosphorylase Kinase; domain 1 798 915 - -
Cca07g01544 1111 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 248 365 - -
Cca07g01544 1111 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 145 267 - -
Cca07g01544 1111 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 9 185 - -
Cca07g01544 1111 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 320 1110 - -
Cca07g01544 1111 Gene3D Ribonuclease Inhibitor 301 473 IPR032675 -
Cca07g01544 1111 Pfam Leucine rich repeat N-terminal domain 46 83 IPR013210 -
Cca07g01544 1111 ProSiteProfiles Leucine-rich repeat profile. 688 710 IPR001611 GO:0005515
Cca07g01544 1111 PRINTS Leucine-rich repeat signature 137 150 - -
Cca07g01544 1111 PRINTS Leucine-rich repeat signature 686 699 - -
Cca07g01544 1111 Gene3D Ribonuclease Inhibitor 198 298 IPR032675 -
Cca07g01544 1111 Gene3D Ribonuclease Inhibitor 44 197 IPR032675 -
Cca07g01544 1111 Pfam Leucine Rich Repeat 665 686 IPR001611 GO:0005515
Cca07g01544 1111 Pfam Leucine Rich Repeat 568 590 IPR001611 GO:0005515
Cca07g01544 1111 Gene3D Transferase(Phosphotransferase) domain 1 916 1111 - -
Cca07g01544 1111 SMART LRR_typ_2 302 326 IPR003591 -
Cca07g01544 1111 SMART LRR_typ_2 446 470 IPR003591 -
Cca07g01544 1111 SMART LRR_typ_2 350 374 IPR003591 -
Cca07g01544 1111 SMART LRR_typ_2 567 590 IPR003591 -
Cca07g01544 1111 SMART LRR_typ_2 158 182 IPR003591 -
Cca07g01544 1111 SMART LRR_typ_2 398 422 IPR003591 -
Cca07g01544 1111 SMART LRR_typ_2 638 662 IPR003591 -
Cca07g01544 1111 SMART LRR_typ_2 110 134 IPR003591 -
Cca07g01544 1111 SMART LRR_typ_2 686 709 IPR003591 -
Cca07g01544 1111 SMART LRR_typ_2 254 278 IPR003591 -
Cca07g01544 1111 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 9 185 - -
Cca07g01544 1111 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 145 267 - -
Cca07g01544 1111 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 320 1110 - -
Cca07g01544 1111 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 248 365 - -
Cca07g01544 1111 ProSiteProfiles Protein kinase domain profile. 837 1111 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01544 Cca-Chr7 40077259 40081171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01544 15 1013 Receptor kinase-like Gene Family AT4G08850 42.759 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca07g01544 Pkinase 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01544 - - gmx:100811066 1535.01