Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01537 ATGGATAGGGGAATTGAAGTACTCTCTCCAGCCTCCTACTTTCAAAATTCCAATTGGTTGTTCCAGGAAAGCAAGGGAGCAAGATGGACCCCAGAGGAGAACAAGGTGTTTGAGAATGCTTTGGCTTACTTTGATAAGGACACACCAGATAGATGGATGAGGGTGGCAGCCATGATTCCAGGAAAAACTGTTGGTGATGTGATCAAACAGTACAGAGAGCTAGAGGAAGATGTGTGTGTCATTGAAGCAGGTTTGGTCCCGGTTCCTGGCTATACTGCTGCCATTTCTTTCACATTGGAGTGGGATGATAACAATCAAGGCTATGATGAGTTCAAGCAGTTTTGTAGTGTTGGTGGGAAAAGGGGTGCATCCACTAGGCCATCTGAGCATGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAGGAGCATAGGCAATTTCTGCTGGGTCTCAAGAAGTATGGTAAAGGAGATTGGAGAAACATCTCTAAGAACTTTGTGACCTCAAGGACACCAACTCAGGTTGCAAGTCATGCTCAGAAGTACTATATCAGGCAGCTTACAGGAGGGAAGGATAAGAGAAGGTCTAGCATCCATGACATCACAATGGTCAATCTCCAAGAAACAAAATCTCCTTCATCAGACACTACAAGGCCCTCTTCTCCCTTGCAGAATCAGAAATTGTCTAGCATGCTTAAGCAAGAATATGAGTGGAAATTGGCGTGTGAAGACATGCCAATTGTTTTCAATTCAACAAACGGAAGCATGTTCATGGCAACGCCACTTCATGGGATTTCTTCATATGAATCTAGACCACAGGAGCATGATTTACTCGGACAATCTCCATGGATGCCGGTTTTCACCTTATGA 867 0.4452 MDRGIEVLSPASYFQNSNWLFQESKGARWTPEENKVFENALAYFDKDTPDRWMRVAAMIPGKTVGDVIKQYRELEEDVCVIEAGLVPVPGYTAAISFTLEWDDNNQGYDEFKQFCSVGGKRGASTRPSEHERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISKNFVTSRTPTQVASHAQKYYIRQLTGGKDKRRSSIHDITMVNLQETKSPSSDTTRPSSPLQNQKLSSMLKQEYEWKLACEDMPIVFNSTNGSMFMATPLHGISSYESRPQEHDLLGQSPWMPVFTL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01537 288 SUPERFAMILY Homeodomain-like 28 82 IPR009057 -
Cca07g01537 288 MobiDBLite consensus disorder prediction 206 225 - -
Cca07g01537 288 ProSiteProfiles SANT domain profile. 138 186 IPR017884 -
Cca07g01537 288 CDD SANT 28 74 IPR001005 -
Cca07g01537 288 PANTHER TRANSCRIPTION FACTOR DIVARICATA 3 259 - -
Cca07g01537 288 ProSiteProfiles Myb-like domain profile. 130 182 IPR001005 -
Cca07g01537 288 CDD SANT 137 181 IPR001005 -
Cca07g01537 288 Pfam Myb-like DNA-binding domain 137 181 IPR001005 -
Cca07g01537 288 Gene3D - 136 186 - -
Cca07g01537 288 Gene3D - 21 88 - -
Cca07g01537 288 SMART sant 25 77 IPR001005 -
Cca07g01537 288 SMART sant 134 184 IPR001005 -
Cca07g01537 288 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 133 185 IPR006447 GO:0003677
Cca07g01537 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 186 IPR017930 -
Cca07g01537 288 SUPERFAMILY Homeodomain-like 132 185 IPR009057 -
Cca07g01537 288 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 259 IPR043363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01537 Cca-Chr7 39782663 39785324 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca07g01537 Myb_DNA-binding 4.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01537 - - gmx:100775697 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01537 07 39782663 39785324 Cca05g01567 05 34834403 34836859 ECH
Cca07g01537 07 39782663 39785324 Cca01g01834 01 42742172 42744961 ECH
Cca07g01537 07 39782663 39785324 Cca07g01537 07 39782663 39785324 ECH
Cca07g01537 07 39782663 39785324 Cca05g01238 05 29957638 29960043 ECH
Cca07g01537 07 39782663 39785324 Cca01g00715 01 9365367 9368115 ECH