Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01523 ATGATAGTTGCTATGGATTTGAATGCCTCGCCTGTGCCGGAGGAAGATGAAGATGCTTTTGAGAGCCAGGTCGAAGAGTACCATGCGCCAGAAGAGCGCATGGAAACTTCAGTTGATATTGCTCGCCGGGAACGTGAAGAAAGAAAGAGAAGGTTGAAAAGAGAACGTTCGGATGACAAACCTGTGCAAGTATCACATTCACCTGGACCTGATCAGCTATTTCATACTAAAATCCTTAAAACATATGATAGAAGTAAGCTTCCCCCAGGTTGGTTGGATTGCCCTTCATTTGGCCAGGAAATTTTTTGCATGATACCTTCCAAGGTTCCACTTGGTGAATCATTCAATGACTACATCATTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAACTTGGTCTGGTAATTGATTTGACAAATACTTCCCGATACTATCCAGTAGCAGATCTTAAAAAGGAGGGTATCAAGCATGTTAAGATTCAATGCAAGGGCCGCAATTCTGTACCTGATAATGTATCTGTTAATCATTTTGTCTATGAGGTTACGCAATTTATATCACGTCAAAAACACTCGAGAAAGTATATACTTGTTCATTGTACACATGGTCATAATCGTACAGGATACATGATCATCCATTATCTGATGCGCACAATGTCAATGTCTGTTACTCAGGCAATAAAAATATTTTCGGATGCACGCCCTCCAGGAATCTATAAACCTGAGTACATTGATGCATTATATGCATTTTATCATGAAAAAAAGCCTGAAATGATAGTTTGTCCCCCTACCCCCGAGTGGAAGAGAGCTCCTGAACTTGTTGATCTCAATGGTGAAGCAGTGCCAgatgatgacgatgatgatgGAGTACCAGGCTCTCCTTTGCATGAGAATCATGAGACTGACACAATAATGACAAATGACGATGTTTTGGGAGATGAGATACCTAATGATCAGCAAGATGCATTTCGCCAGTTCTGCTTTCAAACGCTCAGACTAGGTGTTGGGGCCAGAGGGCACATGCAATTTCCTGGATCACACCCAGTTTCTTTAAACAGGGAGAATTTACAACTGTTACGACAGCGTTATTATTATGCGACATGGAAAGCTGATGGAACAAGATATATGATGCTAATCACTATGGATGGATGTTACTTGATTGATAGAAGCTTCAATTTTCGAAGGGTCCAAATGAGGTTTCCTTGCAGGATTACGAATGATGGCATGGCTGAGAAGACACACCACTTCACATTACTTGATGGGGAGATGATTATTGATAGATTGCCAGATTCAAAAAAGCAGGAACGGAGATACCTCATATATGACCTGATGGCAGTCAATGGAGTATCAGTAATAGAGCGGCCATTTTATGAACGGTGGAAGATGCTTGAGAAAGAAGTGATTGAACCCAGGAATCATGAACGCTTTCAGAGCAGAAATCCTTACTACAGATATGACATGGAACCATTCAGGGTAAGGAGGAAAGATTTTTGGTTGCTCTCTACTGTCACGAAGCTTTTAAACGAATTCATTCCAAAACTCTCACATGATGCAGATGGTCTCATATTTCAGGGTTGGGACGATCCCTACATACCACGCACTCATGAAGGCCTCTTAAAGTGGAAATATGCTGATCTGAATTCAGTTGATTTTCTCTTTGAGATTGATAATGATTGTCAGCTACTTTTTCTCTATGAACGAGGAAAAAAGAAACTCATGGAAGGGTACAGGGTTGTATTCGAAGAAGGTTCGGATCCCTTGCATTTTTCTGGAAAGATCATTGAATGTTCTTGGGATTCTGATAGACTGGAATGGATATACAAACGAGTCAGAACAGATAAATCAACTCCAAATGACTTTAATACTTATAGAAAGGTGATGCGAAGTATAAGAGACAATATCACAGAGGATATCCTGCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATCCTGCTGAATGAAATAAATGAGATAATTCGCCTTCCCATGTATGCCGACAGGATAAGAATCGATAGCAAAGCCCATCACCACACCAATATGGCACGGCGAAGGTAA 2187 0.3777 MIVAMDLNASPVPEEDEDAFESQVEEYHAPEERMETSVDIARREREERKRRLKRERSDDKPVQVSHSPGPDQLFHTKILKTYDRSKLPPGWLDCPSFGQEIFCMIPSKVPLGESFNDYIIPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVADLKKEGIKHVKIQCKGRNSVPDNVSVNHFVYEVTQFISRQKHSRKYILVHCTHGHNRTGYMIIHYLMRTMSMSVTQAIKIFSDARPPGIYKPEYIDALYAFYHEKKPEMIVCPPTPEWKRAPELVDLNGEAVPDDDDDDGVPGSPLHENHETDTIMTNDDVLGDEIPNDQQDAFRQFCFQTLRLGVGARGHMQFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNFRRVQMRFPCRITNDGMAEKTHHFTLLDGEMIIDRLPDSKKQERRYLIYDLMAVNGVSVIERPFYERWKMLEKEVIEPRNHERFQSRNPYYRYDMEPFRVRRKDFWLLSTVTKLLNEFIPKLSHDADGLIFQGWDDPYIPRTHEGLLKWKYADLNSVDFLFEIDNDCQLLFLYERGKKKLMEGYRVVFEEGSDPLHFSGKIIECSWDSDRLEWIYKRVRTDKSTPNDFNTYRKVMRSIRDNITEDILLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILLNEINEIIRLPMYADRIRIDSKAHHHTNMARRR 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01523 728 PIRSF mRNA_capping_HCE 74 662 IPR017074 GO:0004484|GO:0006370|GO:0140818
Cca07g01523 728 PIRSF mRNA_capping_HCE 690 728 IPR017074 GO:0004484|GO:0006370|GO:0140818
Cca07g01523 728 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 275 IPR029021 -
Cca07g01523 728 MobiDBLite consensus disorder prediction 285 308 - -
Cca07g01523 728 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 3 652 - -
Cca07g01523 728 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 184 253 IPR000387 GO:0016311|GO:0016791
Cca07g01523 728 SUPERFAMILY Nucleic acid-binding proteins 553 649 IPR012340 -
Cca07g01523 728 MobiDBLite consensus disorder prediction 23 62 - -
Cca07g01523 728 Gene3D Protein tyrosine phosphatase superfamily 65 280 IPR029021 -
Cca07g01523 728 Gene3D - 551 642 IPR012340 -
Cca07g01523 728 Pfam mRNA capping enzyme, catalytic domain 355 550 IPR001339 GO:0004484|GO:0005524|GO:0006370
Cca07g01523 728 Coils Coil 38 58 - -
Cca07g01523 728 MobiDBLite consensus disorder prediction 1 71 - -
Cca07g01523 728 CDD RNA_5'-triphosphatase 90 256 - -
Cca07g01523 728 Pfam mRNA capping enzyme, C-terminal domain 555 647 IPR013846 -
Cca07g01523 728 ProSiteProfiles Dual specificity protein phosphatase domain profile. 109 265 IPR020422 GO:0006470|GO:0008138
Cca07g01523 728 PANTHER MRNA-CAPPING ENZYME 3 652 - -
Cca07g01523 728 Gene3D DNA ligase/mRNA capping enzyme 314 550 - -
Cca07g01523 728 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 315 551 - -
Cca07g01523 728 Pfam Dual specificity phosphatase, catalytic domain 139 259 IPR000340 GO:0008138|GO:0016311
Cca07g01523 728 SMART dsp_5 119 261 IPR020422 GO:0006470|GO:0008138
Cca07g01523 728 Coils Coil 648 648 - -
Cca07g01523 728 CDD Adenylation_mRNA_capping 343 551 IPR001339 GO:0004484|GO:0005524|GO:0006370
Cca07g01523 728 ProSitePatterns Tyrosine specific protein phosphatases active site. 206 216 IPR016130 GO:0016311|GO:0016791
Cca07g01523 728 ProSiteProfiles ATP-dependent DNA ligase family profile. 437 578 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01523 Cca-Chr7 39432183 39451705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01523 1 728 Protein tyrosine phosphatase (PTP) family AT3G09100 64.120 0.0 924
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01523 K13917 - gmx:100803597 1299.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01523 07 39432183 39451705 Cca07g01523 07 39432183 39451705 ECH