Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01519 ATGGAGGTGGAGGGTTCCGATAATTCTCATGGCAAGAACCGTAAAAGAGGGTTTTCAAGAAAACTTGATGTCGGTGAAAAAGTGGAGTTGAGGAGTTTAGAGATGGGTTTTGCGGGATCATGGCACCCTGCGACAGTTTTACAGTGCGAGAAGTTGAAGCGCCTCATCAGATATGAAAATGTTTTGGATAATAATGGTGAGGGTTATCTTGAGGAAGAAGTAACTGTTTCAAAAGCTTTGGATGGTGATACTGAAGACGTAAACTACTACGAGCGTGGGATCCTTAGGCCGGTGCCTCCTTTGGTTGATTTTGAGAAATCAGACCTTAGGTTTGGTCTTTGTGTTGATGTGAAATATGAGGAAGCTTGGTGGGAGGGTGTTATATTTGACCACAATGATGGAATGACGAAGAGGACTGTGTTTTTCCCTGATTTGGGTGATGAACTACAAGCTGAAATGCATCAGATGCGGATTACTCAGGACTGGGATGAAGTTACAGAGGAGTGGGGGCAGCGAGGGAAGTGGGTGTTTCTTGACTTGGTTGAGGAGCTGAAGGGGAAATTGTTTGTTGCAGTTTCAGCTCAGCAAATTTGGTATGATGTGCGCCTAAAAAGGGATTTTTTTGAGATGATTAGAGAATGGACATGTAATGTGGAGTACTTGTGGAAAAAAGTGGTGGTGGAGGTAGTTAATGACTACTTATCTGTTATGGTAAAAGAAGTTATCTCGACCTTAAACCTTCCAGGAAGTTTATTAAATGAAGCACCAGAGCTGGCTTCTGCTGAAGCTGTGGCTAGTGTTGGTTTAAACACGACCCTGCCTGATAAGGAAACTCATGTTAAACAGATCTTACCTGAGTTTCAAAAAGAATTTGGTCCCAATGGTGGTGCTTGTGAAGTAGTTTCAGGTGCTAACTGTTTTGAAGAAAGTACAAGTTCCGACTATTGGAAACCTGTGAATTTCTCTGAAGGTGAATTCTGCCCTGATGCTGTTAATGAATATCCACGGGCTTCCAAACATGCAAGGACATTTTGGTCGGAGAAATTGCAAAAACATCTTGTGTACCTTGGATGGAAAATTGAGAGGACAAAGAAACGTAACATTCAACGTTACAGGTATCATGTTCCTGATAAACTGGGCCATAAAGCTTATCTTTCACTCCTTGAAGTTTGTAGGGCTATAAAGAACAACCCCAATATGAACTCCTTGCAGTTCCAAAATGATCAGATTATAATGCAACATCCTACAGTTGACTGTCATCTTTCAGAGGTGCCTCTTAATCCATCAGAAAATATTCTAACTATGCCTCTTAATCCGTCAGAAAATATTCCAACTGTGCCATTTTCTCCTGTTGAAGATGAACCTGATTTTTGTCCTCAAGCTATCATGCAATATTATAACGCCCATGTATCCAATAAGAATCGGGTTGATAAAAGAAAATGGATACCGAAAGCAAAGAATCATCTGTTAGCAGAAGGATGGTTTTTTGACTATCCACCTCCAAATAATAAGAAAAGGGGAATAATATACATGTCTCCACAGAATCGGAAATTCCCAACACTCCATGCAGCATGCAGATTTTGTATCGAAGAAAACACTCCTAAATGGACTATGTTTGGCAATCAACCTGTAAATGTGTCAAGCATGAATGAGGCAAATGTTGATCAGCAATCCCAAATGCAACTACAAGACCCTGAGTTGCAGGCTATGGATGGTACTGCTGCTAGTAGGTCGAGTGTAAATCGAAAGCGGAAAAGGTTGAGGGATTCAAAGGCCAACATACCGAAGTGCCAAAGCAATGGATTGCCTCTACGGGTGTTAAGATCAAGGAAGAGGGTGCAAAAGGTGTCTGTCCCTTCTCTTTTACATCAAAAACCTTTAAATGTTATGTCTTGCTTGATAGACAGCAACATCATCTTACCAAGGTCGAAGGTTTACTATAAGGAAAAAAGCAGGTACCGTGAAGTCCCTACTTTGGGTGAAGGGAAAATAACTCACGATGGAATTAAGTGTAACTGTTGCATGAAGATATTCAGTTTTGTTGGCTTTGAAAATCATGTTGGTGGCAGTAGTACCTGCAGACCCTCTGCTAGTATTTTTTTGGAAGATGGTAGATCACTGTTAGATTGCCAGATAGAAATGATGCGAAGTCATAAGACGAAGGAAACTAGCGGAAAATCATTCAGTGATTTGTCTATAGTTGAGAATGACTACATTTGTTCTGTTTGCCACTATGGCGGTGAACTTATTTTATGCGATAAATGTCCATCTTCATTTCATAAGACGTGTCTCGGTTTGGAGGAAATCCCTGATGGTGACTGGTTTTGTCCATCTTGTCGCTGCGGGATTTGTGGCCAAAGGAAAATTGATGGAGATGAGGTTGGACATTTCCTAACTTGCATTCAGTGTGAACATAAATATCATGTTAGGTGCCTGAAAAATGGAGCTGTAGATATATCAAGATATCTTGGAAATTGGTTCTGTGGAAAAGACTGTGAAAAGATATATGAGGGCCTTCATAAATTATTAGGAAAACCAATTTCTGTGGGTGTGGACAAGCTAACTTGGACATTGGTGAAGTTTATCGACCCTGACCGTTGTGACAGTGGTAGTATTAAAAGTGACTTATTGGCAGAAAGTTACTGCAAACTCAATCTCGCTCTTTCGGTGATGCATGAGTGTTTTAAGCCTCTAAAGGAATCTTTCACTCGCAGAGATATTGTGGAAGATGTTATATTCAACAGATGGTCAGAGCTTAACCGATTAAGCTTCCAGGGTTTCTATACTGTGCTACTTGAGAGAAATGAAGAACTGATCAGTGTTGCAACTGTTAGGGTCTATGGGAAGAGGGTAGCAGAATTACCTCTTGTTGGTACCAGATTACAATATCGTCGACATGGAATGTGTCGCATTTTAATAAATGAGCTTGAAAAGAAACTCACACAACTAGGTGTGGAGAGACTTGTGTTGCCGGCTGTTCCTAGTGTGCTAGAAACATGGACAGGCTCTTTTGGATTTGCAAAGATGACTGATTTTGAGAGATCTCAATTTCTGGACTATACTTTCCTAGATTTTCAGGGTACCATCATGTGCCAGAAGCTGTTGACTAATATTCCATCTAGCGATTCAGTTTTGTTAATAGAGTCACAACTAAAATGTGGTGTATACCAAATAGAAGAGACTGATGAAGGAAGGGTAGTTGATCAACAAATGGAGGACGGCCGCAATCGTGGCTGTAGCGAGTGCGAAATGAGGACAGATCTCCTCCAACGGTTCTTTGACATTTCTTTGGCGGaccaaggagaacctgagggggagaatcaactcgatttcgctcgtgcttcatcttctgttcatcaaggtgatcatcaacatgaggatattggtgatgaggtttag 3399 0.3969 MEVEGSDNSHGKNRKRGFSRKLDVGEKVELRSLEMGFAGSWHPATVLQCEKLKRLIRYENVLDNNGEGYLEEEVTVSKALDGDTEDVNYYERGILRPVPPLVDFEKSDLRFGLCVDVKYEEAWWEGVIFDHNDGMTKRTVFFPDLGDELQAEMHQMRITQDWDEVTEEWGQRGKWVFLDLVEELKGKLFVAVSAQQIWYDVRLKRDFFEMIREWTCNVEYLWKKVVVEVVNDYLSVMVKEVISTLNLPGSLLNEAPELASAEAVASVGLNTTLPDKETHVKQILPEFQKEFGPNGGACEVVSGANCFEESTSSDYWKPVNFSEGEFCPDAVNEYPRASKHARTFWSEKLQKHLVYLGWKIERTKKRNIQRYRYHVPDKLGHKAYLSLLEVCRAIKNNPNMNSLQFQNDQIIMQHPTVDCHLSEVPLNPSENILTMPLNPSENIPTVPFSPVEDEPDFCPQAIMQYYNAHVSNKNRVDKRKWIPKAKNHLLAEGWFFDYPPPNNKKRGIIYMSPQNRKFPTLHAACRFCIEENTPKWTMFGNQPVNVSSMNEANVDQQSQMQLQDPELQAMDGTAASRSSVNRKRKRLRDSKANIPKCQSNGLPLRVLRSRKRVQKVSVPSLLHQKPLNVMSCLIDSNIILPRSKVYYKEKSRYREVPTLGEGKITHDGIKCNCCMKIFSFVGFENHVGGSSTCRPSASIFLEDGRSLLDCQIEMMRSHKTKETSGKSFSDLSIVENDYICSVCHYGGELILCDKCPSSFHKTCLGLEEIPDGDWFCPSCRCGICGQRKIDGDEVGHFLTCIQCEHKYHVRCLKNGAVDISRYLGNWFCGKDCEKIYEGLHKLLGKPISVGVDKLTWTLVKFIDPDRCDSGSIKSDLLAESYCKLNLALSVMHECFKPLKESFTRRDIVEDVIFNRWSELNRLSFQGFYTVLLERNEELISVATVRVYGKRVAELPLVGTRLQYRRHGMCRILINELEKKLTQLGVERLVLPAVPSVLETWTGSFGFAKMTDFERSQFLDYTFLDFQGTIMCQKLLTNIPSSDSVLLIESQLKCGVYQIEETDEGRVVDQQMEDGRNRGCSECEMRTDLLQRFFDISLADQGEPEGENQLDFARASSSVHQGDHQHEDIGDEV 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01519 1132 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 909 1016 IPR016181 -
Cca07g01519 1132 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 874 1035 IPR000182 GO:0016407
Cca07g01519 1132 PANTHER PHD ZINC FINGER PROTEIN 329 1052 - -
Cca07g01519 1132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 732 781 IPR013083 -
Cca07g01519 1132 PANTHER PHD ZINC FINGER PROTEIN 4 291 - -
Cca07g01519 1132 Pfam Tify domain binding domain 662 714 IPR032308 -
Cca07g01519 1132 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 329 1052 - -
Cca07g01519 1132 Pfam PHD-finger 739 781 IPR019787 -
Cca07g01519 1132 CDD NAT_SF 930 990 - -
Cca07g01519 1132 Pfam Agenet domain 25 100 IPR008395 -
Cca07g01519 1132 ProSiteProfiles Zinc finger PHD-type profile. 737 782 IPR019787 -
Cca07g01519 1132 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 4 291 - -
Cca07g01519 1132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 782 835 IPR013083 -
Cca07g01519 1132 CDD PHD2_CHD_II 740 779 - -
Cca07g01519 1132 Gene3D - 891 1025 - -
Cca07g01519 1132 SMART agenet_At_2 20 103 IPR014002 -
Cca07g01519 1132 SMART agenet_At_2 107 164 IPR014002 -
Cca07g01519 1132 MobiDBLite consensus disorder prediction 570 591 - -
Cca07g01519 1132 SUPERFAMILY FYVE/PHD zinc finger 717 780 IPR011011 -
Cca07g01519 1132 MobiDBLite consensus disorder prediction 1102 1132 - -
Cca07g01519 1132 SMART PHD_3 781 832 IPR001965 -
Cca07g01519 1132 SMART PHD_3 739 780 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01519 Cca-Chr7 39348844 39359464 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01519 31 983 PHD Transcription Factor Family AT5G58610 37.218 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca07g01519 Agenet 2.3e-14 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01519 - - ccaj:109815079 2194.85