Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01494 ATGTCCACTTTGCAGATGTCCCATGTTGATTTGGAGCAAGGGAACCATCGCCGTTCGGTTGTGGGAAGTGATGTGAGTGGTGAAGGGAGTCTATGCTTCTCTGATGCTGATGATGGTTCATGCTATTCCCGTTTCTACTCAACAAATGGAGGTTCATACGATGATTACAGCTTTGCTTGTGTTTCTGATCCTGAGCTTGGCCCTGTTCCCCATTCTGGGAGGGCTTCTTCTCTTTCTGATTGTTCTGTGGAGGTGGAAACTAGAACTGGGGTTCCTGAAATCAAGGTGCATTTGGCCAAAGTTGAGAGGGATTGCAGGATTTGTCACATGGGTTTGGAGAGTGATAGTCATGAATGTGGTGCACCCATTGAATTGGGATGTTCCTGTAAGGATGATTTGGCTGCTGCTCACAAGCACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGGACCTGTGAAATTTGTCATTCTGTTGCTCGGAATGTTTATGGAGCAAACGATGAATCGACAGAGCATGCGAGTGATGGCAACAACGGCACTACAACAGCCACACTCTCAACACCTGTTCCTTCAGCAGAACCACGACGATTTTGGCACGGCCATCGCTTCCTGAATTTCCTGCTTGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTTTTTCACTTCAATGTGCCATCATCCTAG 690 0.4667 MSTLQMSHVDLEQGNHRRSVVGSDVSGEGSLCFSDADDGSCYSRFYSTNGGSYDDYSFACVSDPELGPVPHSGRASSLSDCSVEVETRTGVPEIKVHLAKVERDCRICHMGLESDSHECGAPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVYGANDESTEHASDGNNGTTTATLSTPVPSAEPRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01494 229 SUPERFAMILY RING/U-box 102 160 - -
Cca07g01494 229 PANTHER ZINC FINGER, RING-CH-TYPE 5 228 - -
Cca07g01494 229 Pfam RING-variant domain 105 156 IPR011016 GO:0008270
Cca07g01494 229 CDD RING_CH-C4HC3_MARCH 105 157 - -
Cca07g01494 229 MobiDBLite consensus disorder prediction 169 191 - -
Cca07g01494 229 PANTHER OS01G0850200 PROTEIN 5 228 - -
Cca07g01494 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 166 IPR013083 -
Cca07g01494 229 SMART ringv_2 104 157 IPR011016 GO:0008270
Cca07g01494 229 MobiDBLite consensus disorder prediction 169 190 - -
Cca07g01494 229 ProSiteProfiles Zinc finger RING-CH-type profile. 97 163 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01494 Cca-Chr7 38961698 38965281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01494 69 229 C3H Transcription Factor Family AT5G05830 61.728 7.71e-69 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01494 - - gmx:100808666 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01494 07 38961698 38965281 Cca05g01553 05 34722311 34726517 ECH
Cca07g01494 07 38961698 38965281 Cca01g01775 01 41554180 41558248 ECH
Cca07g01494 07 38961698 38965281 Cca07g01494 07 38961698 38965281 ECH