Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01478 ATGGCTTCAACTCAGGAAGAGGTGACGCTTTTAGGAGTTATTGTAAGCCCGTTTGTGTGTAGAGTTAAGATTGCTCTCAAGTTGAAGGGAGTTGAATACAAATACGTGGAAGAAGATTTGGGCAACAAGAGTGAGTTGCTCCTCAAATACAACCCAGTTCACAAGAAGGTTCCTGTGTTTGTTCACAATGGGAAGCCCATCGCAGAGTCTCTTGTGATTGTTGAATACATTGATGAGACATGGAACCAAAACCCCATCTTGCCTTCAGATCCTTACCAAAGAGCCTTGGCTCGTTTTTGGTCCAAATTCATAGATGACAAGGTTGTGGGTGCAGCATGGAAAGCTGTTTTCACGGTTGATGAGAAAGAGCGTGAGAAGAATAGTAAAGAATCATTTGAGGCACTGCAGTTTCTTGAGGATGAGATAAATGACAAAAAGTTCTTTGGAGGAGAGGAAATTGGGTTGGTAGATATTGCTGCTGTGTTCATTGCCTTTTGGATTCCTTTGATTCAAGAAATAGGGGGGTTGGAGTTGTTCACAAGTGACAAATTTCCCAAACTCTACAAATGGAGCCAAGAATTAGTGAACCATCCTGTTGTCAAAGAAAGTCTGCCCCCTAGAGACCTTGTTTCTGCCTTTTTCAAAGGACGCTATGAAAGCCTTTCTGCTTCAAAATAG 678 0.4218 MASTQEEVTLLGVIVSPFVCRVKIALKLKGVEYKYVEEDLGNKSELLLKYNPVHKKVPVFVHNGKPIAESLVIVEYIDETWNQNPILPSDPYQRALARFWSKFIDDKVVGAAWKAVFTVDEKEREKNSKESFEALQFLEDEINDKKFFGGEEIGLVDIAAVFIAFWIPLIQEIGGLELFTSDKFPKLYKWSQELVNHPVVKESLPPRDLVSAFFKGRYESLSASK 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01478 225 CDD GST_N_Tau 8 81 - -
Cca07g01478 225 SFLD Main (cytGST) 5 223 - -
Cca07g01478 225 CDD GST_C_Tau 91 217 IPR045074 GO:0004364|GO:0006749
Cca07g01478 225 SUPERFAMILY GST C-terminal domain-like 79 219 IPR036282 -
Cca07g01478 225 SFLD Main.3: Omega- and Tau-like 5 223 IPR045073 -
Cca07g01478 225 Pfam Glutathione S-transferase, C-terminal domain 115 198 IPR004046 -
Cca07g01478 225 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 221 IPR045073 -
Cca07g01478 225 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 6 85 IPR004045 -
Cca07g01478 225 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 213 IPR010987 -
Cca07g01478 225 Gene3D Glutaredoxin 1 89 - -
Cca07g01478 225 PANTHER GLUTATHIONE S-TRANSFERASE-RELATED 1 221 - -
Cca07g01478 225 Pfam Glutathione S-transferase, N-terminal domain 7 79 IPR004045 -
Cca07g01478 225 SUPERFAMILY Thioredoxin-like 8 108 IPR036249 -
Cca07g01478 225 Gene3D - 90 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01478 Cca-Chr7 38522707 38524969 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01478 3 224 Glutathione S-transferase Gene Family AT3G09270 52.679 7.00e-82 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01478 K00799 - gmx:100500052 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01478 07 38522707 38524969 Cca07g01478 07 38522707 38524969 ECH