Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01439 ATGTTGACGGACAACCATCACAACAGATTAAATCCCCTCCATCTCCACATATACCACAAGTATCATCATTTGGATCATCTCCATCAATATCAACAGAATGGAAACCAATTTTTTCAGAATGCTCTTGTCTATTCCATGCATCTATCTGGCACTGTAGAAGAGAAACTCCAGATTCCAAATATATGTTTTGATAAGGCTGTGGCAATTTGCTTCCTGACAGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGCCACTGCCTTATCAAAATATATATTTGGAATCTGGAGTTTCTCGTCTACAGTGCCAGATAGATGCATGGAATAGACAAGAGCATTCTGAAAAAATTGGTTTCCATTCTGTTGATATTGATGGAGATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCGTCAACATTTCATCAGAGATGCTTGGATATACAGATGCTTCCTCCCGGTGAATGGCATTGTCCGAATTGTACCTGTAAATTTTGTGGCATAGCCAGTGGAACTTCTGACAAAGATGAAGCAACTGTGTATGTCCTACGTACTTGCAACTTATGCGAGAAGAAATATCATGACTCTTGCACTAAGGAGATTGATACCCTTCCTGATAACTTTAATACATCAAGCCTTTCTTTTTGTGGGAAAGAATGCAAAGAGAATGGAAACCAATTTTTTCAGAATGCTCTTGTCTATTCCATGCATCTATCTGGCACTGTAGAAGAGAAACTCCAGATTCCAAATATATGTTTTGATAAGGCTGTGGCAATTTGCTTCCTGCATGAAGCTCAAACTTTGAAACTGTGA 849 0.3875 MLTDNHHNRLNPLHLHIYHKYHHLDHLHQYQQNGNQFFQNALVYSMHLSGTVEEKLQIPNICFDKAVAICFLTVSKFELHAGSKLPLPYQNIYLESGVSRLQCQIDAWNRQEHSEKIGFHSVDIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQRCLDIQMLPPGEWHCPNCTCKFCGIASGTSDKDEATVYVLRTCNLCEKKYHDSCTKEIDTLPDNFNTSSLSFCGKECKENGNQFFQNALVYSMHLSGTVEEKLQIPNICFDKAVAICFLHEAQTLKL 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01439 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 196 IPR013083 -
Cca07g01439 282 SUPERFAMILY FYVE/PHD zinc finger 123 179 IPR011011 -
Cca07g01439 282 ProSitePatterns Zinc finger PHD-type signature. 134 173 IPR019786 -
Cca07g01439 282 Pfam PHD-finger 134 176 IPR019787 -
Cca07g01439 282 SMART PHD_3 133 174 IPR001965 -
Cca07g01439 282 ProSiteProfiles Zinc finger PHD-type profile. 131 176 IPR019787 -
Cca07g01439 282 Pfam Tify domain binding domain 70 106 IPR032308 -
Cca07g01439 282 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 72 234 - -
Cca07g01439 282 PANTHER PHD FINGER FAMILY PROTEIN 72 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01439 Cca-Chr7 37658718 37660441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01439 72 233 PHD Transcription Factor Family AT4G14920 62.346 6.31e-70 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca07g01439 PHD 9e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01439 - - ccaj:109804483 319.316