Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01438 ATGAAGAAGGGTCAATGTTTGATGTGGAGTCAGAGAAAGTATTCTATGAGCTCTAGTCTTGATGCATCTACTAATTATCCTTCCTCCTATGATGAACACTCATGGGAAGAACAAGCCTTTGCAAAAGATGCAGCTTGGTCTGGTTGCATATGGCCACCACGATCATATTCTTGTAGCTTTTGCAGAAGGGACTTCAGGTCAGCACAGGCTTTAGGTGGCCATATGAATGTTCATAGAAGAGATAGAGCAAGACTAAAGCAGCCATATAGCCCCCAGAATGAAATCATCAGTGATGATCTTGAGAAAACTCAACCCCAGAATTCAGTTCAAATTTCTTTTACTTCTTTGGGTTTTCTGTACCCATCCTCTCTTAGTGGATTGGCTCATAAAACTAACCCTAATTCTGATACTTATTCTCATGTTCCTGCTTCACCTACCAATTTTTTAGCCACATCGGTCAACAAGAGAATCAGAGAGAAACCCTTGATTCCACTTTACAATAGTTCTTCTATTTTCAAAGGGTCTCACGAGTCTTCCCCTGCTCTTTCTTCTAAATCCTGGTCTAGTTTAACTGAAGACTTCAGATTTTGTTCAAGTAGGCTCGATCCTGAAGCTGGTGTTGTGAAAAAACTGAAGGGATTGGATTCTGGGTGTAGGAGTGAGGGTGATGATGGTAAAAGTAAAACTGATGTGGCTGTAAGCTTGAACTTGTTTATGAGTCAAGCTTATCCACTTGTGCAGTTTGAGACTAAAGAGGCAGTAGATACTAGTTTCAAGAAGAGGAAAGCAGATGCTTCATCCATTCCATTCTTCCCCAAATCATGTTCACTTGATAGGCATCATATGCAGTCACAGTTGTTTGAATTTAGCCCTAGCTCTATAGAAGAGGTTGATCTGGAGTTAAGGCTTGGTTACAGGTCCACGGTATAG 930 0.4097 MKKGQCLMWSQRKYSMSSSLDASTNYPSSYDEHSWEEQAFAKDAAWSGCIWPPRSYSCSFCRRDFRSAQALGGHMNVHRRDRARLKQPYSPQNEIISDDLEKTQPQNSVQISFTSLGFLYPSSLSGLAHKTNPNSDTYSHVPASPTNFLATSVNKRIREKPLIPLYNSSSIFKGSHESSPALSSKSWSSLTEDFRFCSSRLDPEAGVVKKLKGLDSGCRSEGDDGKSKTDVAVSLNLFMSQAYPLVQFETKEAVDTSFKKRKADASSIPFFPKSCSLDRHHMQSQLFEFSPSSIEEVDLELRLGYRSTV 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01438 309 Gene3D Classic Zinc Finger 53 112 - -
Cca07g01438 309 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 308 - -
Cca07g01438 309 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Cca07g01438 309 PANTHER OS07G0101800 PROTEIN 1 308 - -
Cca07g01438 309 SUPERFAMILY beta-beta-alpha zinc fingers 53 82 IPR036236 -
Cca07g01438 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01438 Cca-Chr7 37623453 37624694 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01438 29 87 C2H2 Transcription Factor Family AT2G37740 77.966 1.06e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca07g01438 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01438 - - vra:106758996 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01438 07 37623453 37624694 Cca05g01518 05 34256432 34257516 ECH
Cca07g01438 07 37623453 37624694 Cca01g01705 01 39539540 39545521 ECH
Cca07g01438 07 37623453 37624694 Cca07g01438 07 37623453 37624694 ECH