Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01436 ATGGAATATCAACGGAGTAGAACTGCTGGACGACGGCATGGACAACGGCATGACAACAAGGAACTCAATGGTAGGTGTACAACCTTTTATGTTCAGAACTTTCCAGAAGAATATAATGAAATTGATTTGCGTAGAATTTTTCAAAGGTGGGGGAGGGTGTGGGAAGTTTTCGTAGTTAGAAAAAGGAATAGATGGGGCAACAAATTCGGTTTTGTTAGATTTCTGGATGTAAAAGATGTTAAGAGACTTGAACGAGAACTAGATAATGTTCGGATAGGAAGTCAAAAGTTGTTTGTCAATTTGCCTAAATTCCCAAGGAATGACTCCGTATTCATGCCTAGTAACAAAGAAAAAATTGTTAAGATGAAGATTTCACACAAGGACACAAGGAAGGTTTCATCTAAGATTGACAATAGGGGATTGAATGGGAAGGAATTACCAGTAGGAGATGATAAGAGGAAATCTTATGCTCAAATTGTAAGAGGAAGTGATAGAGGAAAAATTTCTCAAAGTGGATTAAGGAGTGTTGGGTGGGTAGACTGA 543 0.3812 MEYQRSRTAGRRHGQRHDNKELNGRCTTFYVQNFPEEYNEIDLRRIFQRWGRVWEVFVVRKRNRWGNKFGFVRFLDVKDVKRLERELDNVRIGSQKLFVNLPKFPRNDSVFMPSNKEKIVKMKISHKDTRKVSSKIDNRGLNGKELPVGDDKRKSYAQIVRGSDRGKISQSGLRSVGWVD 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01436 180 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 96 IPR000504 GO:0003723
Cca07g01436 180 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 104 IPR000504 GO:0003723
Cca07g01436 180 SUPERFAMILY RNA-binding domain, RBD 15 109 IPR035979 GO:0003676
Cca07g01436 180 MobiDBLite consensus disorder prediction 161 180 - -
Cca07g01436 180 MobiDBLite consensus disorder prediction 1 20 - -
Cca07g01436 180 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 26 108 - -
Cca07g01436 180 SMART rrm1_1 28 100 IPR000504 GO:0003723
Cca07g01436 180 CDD RRM_SF 30 100 - -
Cca07g01436 180 PANTHER RNA RECOGNITION MOTIF 26 108 - -
Cca07g01436 180 Gene3D - 6 104 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01436 Cca-Chr7 37570449 37571070 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01436 27 99 Eukaryotic Initiation Factors Gene Family AT3G16380 34.247 1.41e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01436 - K12891 ccaj:109803325 119.783