Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01430 ATGGGAAATACAAGAAGCTGCCAAGTCAGCGTTCATTGGAATCTTTCGCTCCTTGCCACGGAAAATGACATGCAAAGCCTCAAAAATGTTTCATCCCAGGTTGATCAGCTTCTCTATGCTGGATTCAAGGATGTGGGTGCTAGCAACCTAACCTTGAATGGTGTGGCTGAGATAGAGAAAAATGGAATCCTCAGGTTGACAAATGAGACCAGTAGGTTATTGGGTCATGCTTTCTACCCATCTCCTTTTCAGTTCAAGAACTCCACCACTGGTAAAGTTTTCTCCTTTTCTTCCTCTTTTGCCCTTGCTATTGTCCCTGAGTACCCCAAGCTAGGTGGCCATGGTTTGGCTTTCGCAATAGCAACTTCCAAAGATCTCAAGGCCCTACCTAGCCAGTACCTGGGACTTCTCAATGCCACAGATAATGGTAACTTCTCTAACCACATCTTTGCTGTTGAGTTTGACACTGTGCAAGACTTTGAGTTTGGGGACATTAATGATAACCATGTTGGAATAGATATCAATAGCATGCAGTCCAATGAATCTGCTAATGTTAGTCTAGTTGGTCTCAATCTCAAAGGTGGGAAACCCATTCTAGCTTGGGTTGATTATGATTCTGTGTTCAATCTTGTCAATGTTTCACTTTCTGCAACTTCATCCAAACCCGATAAGCCAATTCTGTCCTTTAATGTGGATCTCTCACCCTTTCTTCATGATACTATGTATGTTGGGTTCTCTGCATCAACGGGTTTGCTTGCTAGCTCTCATTACATTTTGGGTTGGAGCTTTAAAATCAATGGACCAGCACCACCCCTTGATCTCTCTTCTCTCCCACAGCTTCCACAGCCAAAGAAGAAACACACGTCTCTTATAATTGGGGTTTCTGTCTCAGTTGTTGTTATTGTGTTGTTAGCTATATCATTTGGCGTTTACTTGCACAGAAAAATGAAGAACGCTGATGTGATAGAAGCATGGGAGCTTGAGGTTGGGCCACATAGGTACTCCTACCAAGAGCTCAAGAAGGCCACTAGGGGTTTCAAGGACAAAGAGCTACTTGGGCAGGGTGGTTTTGGCAGAGTTTACAAAGGAACATTGCCAAATTCCAAGATCCAAGTAGCCGTCAAGCGTGTTTCACATGAATCCAAGCAAGGCCTGAGGGAATTCGTGTCGGAAATAGCTAGCATAGGGAGACTTCGCCACCGGAATTTGGTTCAATTACTTGGCTGGTGTCGCCGGCGGGGTGACCTCCTGCTTGTGTATGATTTCATGGCCAATGGGAGCTTGGACAAGTACTTGTTTGATGAGCCAAAGATTGTGTTAAGTTGGGAGCAGAGGTTCAAGATCATAAAGGGTGTTGCTTCAGCTCTTTTGTATCTTCATGAAGGGTATGAGCAGGTGGTGATACATAGAGATGTGAAGGCCAGCAATGTGCTGCTAGATTTTGAGCTTAATGGAAGACTAGGTGATTTTGGTTTGGCAAGGTTGTATGAACATGGAGCCAACCCCAGCACCACAAGAGTGGTGGGTACATTAGGCTATTTGGCACCTGAGTTGCCTAGGACAGGAAAAGCAACTACTAGCTCTGATGTATTTGCATTTGGGGCACTTTTGCTTGAGGTGGCTTGTGGGCGTAGGCCAATTGAGCCTAAGGCATTGCCAGAAGAGTTAGTTTTGGTGGATTGGGTGTGGGAGAAGTACAAGGGGGGGAGAATACTTGATGTTGTGGACCCCAAACTAAATGGCCATTTTGATGAAAAGGAAGTGTTGGTGGTGTTGAAATTGGGGTTGTTGTGTTCAAATGATGTACCTGCTGCTAGGCCTAGCATGAGGCAAGTGGTGAGGTATTTGGATGGGGAAGTTGAGGTGCCAGAGGACTTGAGAAAGCCTGGTGGAGATCTGAGTCACCAAGAGGGGTTTGATGAGTTTTTGCACTCACTTGCTTCTTCTTCCTTTGATAAGATGAGCTCAAGCTCCAATTTTGGAAATAGGGACATGGATACTAGTTTTCTTTCCTTTGCTAATTCATCTCATTCGCTTCTCCAGGGTAGAGGAGAAACAAGATCAATTTAG 2070 0.4483 MGNTRSCQVSVHWNLSLLATENDMQSLKNVSSQVDQLLYAGFKDVGASNLTLNGVAEIEKNGILRLTNETSRLLGHAFYPSPFQFKNSTTGKVFSFSSSFALAIVPEYPKLGGHGLAFAIATSKDLKALPSQYLGLLNATDNGNFSNHIFAVEFDTVQDFEFGDINDNHVGIDINSMQSNESANVSLVGLNLKGGKPILAWVDYDSVFNLVNVSLSATSSKPDKPILSFNVDLSPFLHDTMYVGFSASTGLLASSHYILGWSFKINGPAPPLDLSSLPQLPQPKKKHTSLIIGVSVSVVVIVLLAISFGVYLHRKMKNADVIEAWELEVGPHRYSYQELKKATRGFKDKELLGQGGFGRVYKGTLPNSKIQVAVKRVSHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFDEPKIVLSWEQRFKIIKGVASALLYLHEGYEQVVIHRDVKASNVLLDFELNGRLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGKATTSSDVFAFGALLLEVACGRRPIEPKALPEELVLVDWVWEKYKGGRILDVVDPKLNGHFDEKEVLVVLKLGLLCSNDVPAARPSMRQVVRYLDGEVEVPEDLRKPGGDLSHQEGFDEFLHSLASSSFDKMSSSSNFGNRDMDTSFLSFANSSHSLLQGRGETRSI 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01430 689 Gene3D Transferase(Phosphotransferase) domain 1 423 629 - -
Cca07g01430 689 CDD STKc_IRAK 352 618 - -
Cca07g01430 689 CDD lectin_legume_LecRK_Arcelin_ConA 36 267 IPR001220 GO:0030246
Cca07g01430 689 Pfam Legume lectin domain 37 277 IPR001220 GO:0030246
Cca07g01430 689 Gene3D Phosphorylase Kinase; domain 1 331 422 - -
Cca07g01430 689 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 30 673 - -
Cca07g01430 689 ProSiteProfiles Protein kinase domain profile. 346 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01430 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Cca07g01430 689 SUPERFAMILY Protein kinase-like (PK-like) 328 624 IPR011009 -
Cca07g01430 689 ProSitePatterns Protein kinases ATP-binding region signature. 352 375 IPR017441 GO:0005524
Cca07g01430 689 Gene3D - 37 273 - -
Cca07g01430 689 Pfam Protein kinase domain 346 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01430 689 SMART serkin_6 346 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01430 689 SUPERFAMILY Concanavalin A-like lectins/glucanases 42 286 IPR013320 -
Cca07g01430 689 PANTHER - 30 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01430 Cca-Chr7 37429307 37432626 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01430 30 688 Receptor kinase-like Gene Family AT3G55550 59.615 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca07g01430 Pkinase 3.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01430 - - gmx:100784346 1153.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01430 07 37429307 37432626 Cca05g01507 05 34138565 34140889 ECH
Cca07g01430 07 37429307 37432626 Cca01g01700 01 39362813 39365337 ECH
Cca07g01430 07 37429307 37432626 Cca07g01430 07 37429307 37432626 ECH