Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01419 ATGTCGTTTAACCGTGCTGCTGCCACTGCTGGAGAAGAAGATGAGCTCTACGAGCAACAGTGGAAGGCTTGCGCGGGACCCCATGTCGAAGTTCCTCGTGCAGGCCAAAGGGTCTTCTACTTCCCTCAGGGACACATGGAACAATTAGAAGTATCAACAAATCAGGAACTAAATCAAAGGATTCCGCTGTTCAAACTTCCCTCCAAGATCCTTTGTCGTGTCGTCAACGTCCATTTACTGGCCGAACAAGAAACAGATGAGGTTTATGCACAGATTACTCTGTTGCCGGATTCCAATCCAAGAGTTCACTCCTTCTGCAAAGTCTTAACTGCCTCTGATACCAGCACCCATGGTGGCTTCTCTGTCCTCAGGAAGCATGCCACTGAATGCCTTCCAGCATTGGATATGTCTCAATCAACTCCAACTCAGGAATTGGTTGCCAAGGATCTTCATGGCTATGAATGGCGCTTTAAGCATATATTTAGAGgtcagccacgtagacacttgctcacaactggatggagtacttttgtgacctctaagagattagttgctggagacacctttgtgtttcttagAGGAAACGATGGAGACTTGCGGGTTGGAGTGAGGCGTCATGCTCCTGTGCAGAGCAGCATGCCTTCATCTGTGATTTCTAGTCAGAGCATGCACCTAGGAGTTCTTGCAACTGCATCTCATGCTGTTGCAACTCAGACTCTTTTTGTTGTATATTATAAGCCAAGGACTAGCCAGTTCATTGTAAGTGTGAACAAATATTTGGAGGCTATCAACCAAAAATGTAATGTTGGTATGAGATTCAAGACGAGGTTTGAAGGAGATGATTCCCCTGAAGCTGAAAAAAGATTTTCGGGCACAATAGTTGGAGTAGAGGATATTTCTCCTCACTGGGTAAATTCAAAATGGCGATCACTTAAGATTCAATGGGACGAACCGGCTTCTTTTCCGAGGCCTGATAGAGTTTCACCATGGGAGATAGAACCCATTTTTGCTTCTGTTCCTACATCATCATCTCAACCTGCTGTTGTAAAGAATAAAAGGCCTCGACAAGCAAATGAAGTTCCAGATCTTGGAGACACACCATTACCTGCCTCTAATTTCTGGGATGCTGGGTCAACACAGTCTGATATGACTCAACTTAGTGTCATGGCCGAAAACAAAAGGAGTGACAATAGTACCCATATGTGGCATCATAAGCAGATTGATAACAGTAAAAGCATTAGCAACGGTATATCAATGAATCAGACAGAAACAAGTTGGCTAGCTTCTCCTCATTCTAGTGGCCCCCCTCATTTGTATCATGACACTACCGATGATAGCAAGAGCATCTCAGCTTGGCCTATTTCCAAAACTCACTCAGAACGATTGAACAATGATCATTTGCTAGACCACGTCGACAAGGAGATCAACAAAGTAGAGGCTGCTACAAGCTGCAGATTGTTTGGGATTGAGCTTATTGATCATGCCAGGAACAACTCTCTTTGTGTAGAGAATGCATCTGTGCATGCAACAAATGCATTTGGAGTCTCCTCTGAGTACAGAACTGATGTAAAACATGAGTCTGATATCTCAAAGGCTTCTAAAGAATGGAAACAAGAAAATCTACAAGTGCCTCCAAAAGAGACTCAGATCAAGCAAGTTTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGGGTTGCAGTGGGCCGTGCTGTGGACTTGACCACTTTAGATGGGTATGATCAACTTGTTGATGAATTGGAGATGATGTTTGACATAAAGGGACAGCTTCAACACAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCATGGCCTGAATTCTGTAATATGGTGAGAAGAATCTTCATTTGTTCTAGCCAGGATGTGCACAAATTGAGTTCTGGGAGCAAACTACCTTTATCATCCGTAGAAGAGACTGTAATAAGCTCAGACACAACTGAGACATAA 2001 0.4168 MSFNRAAATAGEEDELYEQQWKACAGPHVEVPRAGQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLPSKILCRVVNVHLLAEQETDEVYAQITLLPDSNPRVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGNDGDLRVGVRRHAPVQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLEAINQKCNVGMRFKTRFEGDDSPEAEKRFSGTIVGVEDISPHWVNSKWRSLKIQWDEPASFPRPDRVSPWEIEPIFASVPTSSSQPAVVKNKRPRQANEVPDLGDTPLPASNFWDAGSTQSDMTQLSVMAENKRSDNSTHMWHHKQIDNSKSISNGISMNQTETSWLASPHSSGPPHLYHDTTDDSKSISAWPISKTHSERLNNDHLLDHVDKEINKVEAATSCRLFGIELIDHARNNSLCVENASVHATNAFGVSSEYRTDVKHESDISKASKEWKQENLQVPPKETQIKQVCSRSCTKVQMQGVAVGRAVDLTTLDGYDQLVDELEMMFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVHKLSSGSKLPLSSVEETVISSDTTET 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01419 666 PANTHER AUXIN RESPONSE FACTOR 10 656 - -
Cca07g01419 666 Gene3D - 266 339 - -
Cca07g01419 666 ProSiteProfiles PB1 domain profile. 556 637 IPR000270 GO:0005515
Cca07g01419 666 SUPERFAMILY CAD & PB1 domains 559 632 - -
Cca07g01419 666 SMART B3_2 105 207 IPR003340 GO:0003677
Cca07g01419 666 CDD B3_DNA 103 205 IPR003340 GO:0003677
Cca07g01419 666 Pfam AUX/IAA family 527 643 IPR033389 -
Cca07g01419 666 Pfam Auxin response factor 231 312 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca07g01419 666 ProSiteProfiles B3 DNA-binding domain profile. 105 207 IPR003340 GO:0003677
Cca07g01419 666 SUPERFAMILY DNA-binding pseudobarrel domain 97 234 IPR015300 -
Cca07g01419 666 Gene3D - 552 644 - -
Cca07g01419 666 Gene3D - 102 207 IPR015300 -
Cca07g01419 666 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 656 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca07g01419 666 MobiDBLite consensus disorder prediction 343 366 - -
Cca07g01419 666 MobiDBLite consensus disorder prediction 425 447 - -
Cca07g01419 666 Pfam B3 DNA binding domain 105 206 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01419 Cca-Chr7 37282388 37288014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01419 16 649 B3 DNA Binding Superfamily AT4G23980 56.344 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca07g01419 AUX_IAA 7.9e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01419 K14486 - gmx:100780060 1117.83