Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01413 ATGAGGCCCAAAACCACACACACCCTTTTAACCCCACGTCTCAGACTTGTCATGCTTCTCATCCTACAAACATTTCTTGCCACAAGTGAGGCCAAGACTCTAGCTTTGCCACTAAAGTCACAAGTGATCCCATCTGGGTATCTCCCAAGGCCACCCAACAAGCTTCGTTTCCACCACAACGTGAGCCTCACCGTGTCCATAACAGTTGGAACACCCCCACAGAACGTGTCCATGGTCATTGACACAGGAAGCGAACTCTCGTGGCTCCACTGCAACAACACAACCACCACGCGGGTCATACCCGACCCGCTTTTCAACCCGAATCACTCTTCCTCCTACTCCCCCATCTCGTGCTCTTCGTCGACATGCACCACCCGAACCCGAGACTTTCCGATACCCGCTTCGTGCGACTCCAACAACCTCTGCCATGCAACACTCTCCTACGCCGACGCTTCTTCCTCAGAAGGGAACCTCGCTTCGGACACGTTCGGGTTCGGGTCATTCGTTAACCCGGGAATCGTGTTCGGGTGCATGAACTCTTCCTTCAGCACTAACTCGGACTCGGACTCCAACACAACCGGGTTAATGGGTATGAATCTCGGGTCACTCTCGTTGGTTTCTCAGTTAAAAATACCCAAATTCTCGTACTGCATATCGGGTTCTGATTTCTCGGGCATTTTACTTCTCGGGGAATCCAATTTCTCGTGGGTCGGGCCGTTAAACTACACTCCCTTGGTTCAAATATCCACTCCTTTACCCTACTTCGACCGGTCCGCGTACACGGTTCGGTTCAAAGGAATTAAGGTTTCGGGTCAATTACTAAATATCTCGGGCAATGATTTGATACCGGATCATACCGGGGCGGGTCAAACCATGTTTGATTTGGGTACCCAATTTACTTTTTTACTTGGCCCGGTTTATAATGTACTGAGAGATGAGTTTTTGAAGCAAACAAATGGTACTTTGCGGGTATTGGATGATCCGAATTTTGTTTTTCAAATAGCGATGGATCTTTGTTACCGGGTGCCCATGAACCGATCCGAATTACCGGTGTTACCGAGTGTGAGTTTGGTATTTGACGGGGCGGAGATGCGGGTTTCGGGTGAGCAGCTTTTGTATCGGGTGCCGGGTTTGGTTCGGGGCAATGATTGGGTTTATTGCTTCACATTTGGGAACTCGGATCTTCTTGGTGTGGAGGCATTTATCATTGGTCATCACCAACAAGAGAACATGTGGATGGAGTTTGATCTTGTGGAACATAGGATTGGGCTGGCTCATGCACGCTGTGATTTGGTTGGTCAAAAGCTACTTGGGTTGGGCTGA 1323 0.4958 MRPKTTHTLLTPRLRLVMLLILQTFLATSEAKTLALPLKSQVIPSGYLPRPPNKLRFHHNVSLTVSITVGTPPQNVSMVIDTGSELSWLHCNNTTTTRVIPDPLFNPNHSSSYSPISCSSSTCTTRTRDFPIPASCDSNNLCHATLSYADASSSEGNLASDTFGFGSFVNPGIVFGCMNSSFSTNSDSDSNTTGLMGMNLGSLSLVSQLKIPKFSYCISGSDFSGILLLGESNFSWVGPLNYTPLVQISTPLPYFDRSAYTVRFKGIKVSGQLLNISGNDLIPDHTGAGQTMFDLGTQFTFLLGPVYNVLRDEFLKQTNGTLRVLDDPNFVFQIAMDLCYRVPMNRSELPVLPSVSLVFDGAEMRVSGEQLLYRVPGLVRGNDWVYCFTFGNSDLLGVEAFIIGHHQQENMWMEFDLVEHRIGLAHARCDLVGQKLLGLG 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01413 440 Gene3D Acid Proteases 55 231 IPR021109 -
Cca07g01413 440 Pfam Xylanase inhibitor N-terminal 65 230 IPR032861 -
Cca07g01413 440 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 78 89 IPR001969 GO:0004190|GO:0006508
Cca07g01413 440 Gene3D Acid Proteases 235 432 IPR021109 -
Cca07g01413 440 PANTHER ASPARTIC PROTEINASE PCS1 23 437 - -
Cca07g01413 440 PANTHER ASPARTYL PROTEASE-RELATED 23 437 IPR001461 GO:0004190|GO:0006508
Cca07g01413 440 ProSiteProfiles Peptidase family A1 domain profile. 63 425 IPR033121 -
Cca07g01413 440 Pfam Xylanase inhibitor C-terminal 259 424 IPR032799 -
Cca07g01413 440 SUPERFAMILY Acid proteases 64 430 IPR021109 -
Cca07g01413 440 CDD pepsin_A_like_plant 64 429 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01413 Cca-Chr7 37198080 37199786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01413 31 430 Miscellaneous Gene Families AT1G77480 23.888 2.64e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01413 - - var:108328529 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01413 07 37198080 37199786 Cca07g01413 07 37198080 37199786 ECH
Cca07g01413 07 37198080 37199786 Cca10g00393 10 4116138 4117345 ECH