Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01404 ATGCAAAGTTTGATGATAATGGATCCACGTTTTTGTGGGTTTAATGGTTCCCATAATGAAATCCGGTTGGGGAATCAGTCTTTGCCGATTCTGCAGAATCAGAGATTTGAAAACGGTTTTTTTGACCAATCTAGGGAATTTGGTTACCTTCAATCCAATCTAGTACCAGCCAACAACATACCTTCATCCTCGGTTTTGACTCATGAGGAAGAACCTTCCCCGGAGGATTGTGAGTTTTCTGATGCTATTTTGAGTTACATCAGTCAGATCCTTATGGAAGAAGACATGGAGGATAAGACATGCATGTTGAAAGATTCTTTGGATCTTCAAATTGCTGAGAAATCGTTCTATGAGGTCATAGGTGAAAAGTACCCTTCTTCTTCTTTAGGAAATCCAAGTCCTGTTGATCCATATGATGGGGGTGGGGATAATACTCTCTCTGATAATTATGTTTCTTGTTCTTATAATGATGGTGATCTTAGTAGCATTTTTACTAACAATTCTTTGCGCCGAAACTTGGGGGAACCTCCTAACCTAAATTTTCAAGGCAATAATAGCATTTCAAAGTTATCTTATAGTTCTTCAAACAGTGTGATAAGTAGTGTGGAAGGGCCTGTGGAATCTCCAAGCAGTATTCTCCAGGCTCCTGATCTGAACAGTGAGAATCAATCCATTTTGCAATTTCAGAAGGGTGTTGAGGAGGCTAGCAAGTTTCTTCCAAGTGGAAATGCGCTCTTTGCTAATTTGGATGTGGCTAATTTTTCAACACTAGAAGAGGATAAAATGGGGAGTGATGAATTGTCTGTCAAGGTGGAGAAGAATGAGGGTGAGCCTTTCCTTGTTGGAGCCAAAGGAAGGAAACATCACCACAGGGAAGAGGGGGATGTTGAAGAAAATAGAAGCAGCAAGCAAGCCGCGATTTTCTCCGAACCTACATTGCGAACAACAATGACTGATATAATCCTGCTTTATAGTTTAGGGGATGGCAAGAAGCATTACATAGCCCGTCGTGAGGCTTTGCAAATTAAGAATGACAAGATAGTGCTGTCAAATGGTAAATCAAAGGCTTCCAATAGTGGCAAGGGACGTGGTAAGAAACACAATGGGAAAAAGGAAGTGGTTGATTTGAGAACACTTTTGGTCCTTTGTGCACAAACTGTTGCTGCAGATGACTATAAAGGGGCACATGAGTTGCTGAAGCGGATCAGACAGCACTCAAACCTTTTTGGGGATGGAAATCAGAGGTTGGCTCATATCTTCGCAGATGGCCTTGAAGCACGATTGGCTGGTACTGGAAGCCAGATTTACAAAGGACTTGTGAGTAAAAGAACATCAGCTGCGGATTTTCTGAAGGCCTTTCATCTATATCTTGCTGCTTGCCCTTTTAGGAAGATGGCTAGTTTTATCTCTAATGTTACAATAAGGAAATCTTCAGAAAATTCAGCTAGGCTCCATGTTATTGATTTTGGTATCCTTTATGGTTTCCAGTGGCCAACTTTGATTCAGAGACTTTCTGCAACATTTGGAGGTAAACTTCGGATTACAGGAATAGACTTCCCACAACCTGGTTTCAGGCCTGCTGAGAGAATTATTGAAACTGGACGCCGGCTAGCAGCATATGCTGAATCTTTTAAGGTTCCATTTGAGTACAATGCAATAGCAAAAAAATGGGAAACAATTCAACTTGAGGAACTCAAGATTGATAGGGATGAGTACCTTGTTGTTACCTGTTTTTATCGTGGTAAAAATGTGCTGGATGAATCTGTGGTTGTGGACAGTCCAAGGAATAAATTCCTGAGTTTGGTAAGGAAGATCAACCCAGATTTATTCATTCATGGCATTACTAACGGGGCCTTTAATGCACCTTTCTTTGTTACTCGATTTCGGGAGGCACTGTTTCACTACTCTTCACTTTTTGACATGCTTGAAACCATTGTGCCTCGCGAGGACTGGGAGAGGATGCTAATTGAGAAAGAGATATTTGGGAGGGAAGCATTGAATGTCATAGCTTGTGAAGGCTGTGAGAGAGTAGAGAGGCCAGAGACATATAGGCAGTGGCAAGCCCGGATTCTAAGGGCTGGATTTTTGCAACAATCTTTTGAGCGTGAGTTAGTAAAGAGGGCAATAGAGAAAGTAAGGACTAGCTACCACAAAGATTTTGTAATTGATGAAGATAGTCAATGGTTGTTGCAAGGTTGGAAGGGGCGAATTGTTTACGCCCTTTCTTGTTGGAAACCTGCATGA 2244 0.4153 MQSLMIMDPRFCGFNGSHNEIRLGNQSLPILQNQRFENGFFDQSREFGYLQSNLVPANNIPSSSVLTHEEEPSPEDCEFSDAILSYISQILMEEDMEDKTCMLKDSLDLQIAEKSFYEVIGEKYPSSSLGNPSPVDPYDGGGDNTLSDNYVSCSYNDGDLSSIFTNNSLRRNLGEPPNLNFQGNNSISKLSYSSSNSVISSVEGPVESPSSILQAPDLNSENQSILQFQKGVEEASKFLPSGNALFANLDVANFSTLEEDKMGSDELSVKVEKNEGEPFLVGAKGRKHHHREEGDVEENRSSKQAAIFSEPTLRTTMTDIILLYSLGDGKKHYIARREALQIKNDKIVLSNGKSKASNSGKGRGKKHNGKKEVVDLRTLLVLCAQTVAADDYKGAHELLKRIRQHSNLFGDGNQRLAHIFADGLEARLAGTGSQIYKGLVSKRTSAADFLKAFHLYLAACPFRKMASFISNVTIRKSSENSARLHVIDFGILYGFQWPTLIQRLSATFGGKLRITGIDFPQPGFRPAERIIETGRRLAAYAESFKVPFEYNAIAKKWETIQLEELKIDRDEYLVVTCFYRGKNVLDESVVVDSPRNKFLSLVRKINPDLFIHGITNGAFNAPFFVTRFREALFHYSSLFDMLETIVPREDWERMLIEKEIFGREALNVIACEGCERVERPETYRQWQARILRAGFLQQSFERELVKRAIEKVRTSYHKDFVIDEDSQWLLQGWKGRIVYALSCWKPA 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01404 747 PANTHER SCARECROW-LIKE PROTEIN 9 45 746 - -
Cca07g01404 747 ProSiteProfiles GRAS family profile. 367 745 IPR005202 -
Cca07g01404 747 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 45 746 IPR005202 -
Cca07g01404 747 Pfam GRAS domain family 376 745 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01404 Cca-Chr7 36926389 36930303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01404 75 746 GRAS Transcription Factor Family AT2G37650 53.441 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca07g01404 GRAS 4.6e-105 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01404 - - ccaj:109816616 1444.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01404 07 36926389 36930303 Cca07g01404 07 36926389 36930303 ECH
Cca07g01404 07 36926389 36930303 Cca10g00403 10 4199642 4201899 ECH
Cca07g01404 07 36926389 36930303 Cca04g00633 04 6246505 6249114 ECH