Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01396 ATGAAGGATAGGCAACGTTGGAGAGCCGAAGAGGATGCTTTATTGCGCGCATATGTCAAACAGTATGGTCCTAGGGAATGGAATCTCGTGTCACAGCGCATGAACACGCCTCTTAATAGAGACGCCAAGTCTTGCTTAGAAAGGTGGAAGAACTACCTCAAGCCTGGCATCAAGAAAGGTTCTCTCACTGAGGAAGAGCAACGTCTTGTGATCAACCTTCAAGCAACACACGGCAACAAGTGGAAGAAAATCGCTGCACAAGTCCCTGGTCGCACTGCCAAGAGATTAGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAACAAAGAGAAACAAAGGGAAATAACTGTGCTATTGACCCTATAAACGATAGCAAGTACGAGCACATACTAGAGAGTTTTGCTGAGAAACTAGTCAAAGATAGGCCTTCACCATCATTTGTAATGGCCACCTCCAATAGTTCTTATTTGCACGCAGATGCGCCAGTGCCGGTGCCGGCACCGGCCTTGCTCCCGTCGTGGCTTTCGAATTCCAATGGGACGGCAGCCCCTGTGAGGCCGCCGTCCCCATCGGTGACTCTTAGCCTTTCGCCATCGACGGTGGCAGCGCCGCCTGCGTGGCTGCAGCCGGTAAGAGGGCCCGACAATACCCGCCCTCTTGTGTTAGGCAATGTGGCACCACACGGCGGTGCTGTCCTAGCCTTTGGCGAAAACATGGTCATGTCTGAGTTGGTGGAGTGTTGCAAGGAGTTGGAGGAAGTGCACCATGCTTTGGCAGCACACAAGAAGGAGGCAGCGTGGCGGTTGAGCCGGGTGGAGCTGCAGTTGGAGTCGGAGAAGGCGAGCCGGCGGAGGGAGAAGATGGAGGAAGTGGAGGCAAAGATGAAAGCCCTGAGGGAGGAGCAAACGGTGGCATTGGATAGAATTGAAGCAGAGTATAGGGAGCAGTTGGCAGGGTTGAGAAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGCTGAACAATGGGCTGCAAAACACTTGCGCCTCACCAAGTTCCTAGAACAGGTAGGATGCAGATCATGGCTCAATGAACCAAATGGGAGATAG 1083 0.5263 MKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVINLQATHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRETKGNNCAIDPINDSKYEHILESFAEKLVKDRPSPSFVMATSNSSYLHADAPVPVPAPALLPSWLSNSNGTAAPVRPPSPSVTLSLSPSTVAAPPAWLQPVRGPDNTRPLVLGNVAPHGGAVLAFGENMVMSELVECCKELEEVHHALAAHKKEAAWRLSRVELQLESEKASRRREKMEEVEAKMKALREEQTVALDRIEAEYREQLAGLRRDAESKEQKLAEQWAAKHLRLTKFLEQVGCRSWLNEPNGR 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01396 360 PANTHER TRANSCRIPTION FACTOR AS1 1 360 IPR031055 GO:0005634|GO:0006351|GO:0010338
Cca07g01396 360 CDD SANT 6 53 IPR001005 -
Cca07g01396 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
Cca07g01396 360 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Cca07g01396 360 SMART sant 3 55 IPR001005 -
Cca07g01396 360 SMART sant 58 106 IPR001005 -
Cca07g01396 360 Gene3D - 4 58 - -
Cca07g01396 360 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Cca07g01396 360 Coils Coil 270 307 - -
Cca07g01396 360 CDD SANT 63 104 IPR001005 -
Cca07g01396 360 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 360 - -
Cca07g01396 360 Pfam Myb-like DNA-binding domain 7 67 - -
Cca07g01396 360 Coils Coil 309 329 - -
Cca07g01396 360 Gene3D - 62 123 - -
Cca07g01396 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Cca07g01396 360 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01396 Cca-Chr7 36595646 36598916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01396 1 351 MYB Transcription Factor Family AT2G37630 65.854 5.15e-159 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca07g01396 Myb_DNA-bind_6 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01396 K09422 - gmx:100819082 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01396 07 36595646 36598916 Cca07g01396 07 36595646 36598916 ECH