Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01392 ATGGCTGAGGTGAAATCAGAGGAGTGTTGTCAAGAGAATAAGCAATCTACCGCTGCTTCTTGCTCCTCTGTATCTGAAGGCAGTGGCAGTGCAATTCACAAGTCTCCAGGGATATGTAGCCCTGCATCCACCTCGCCCTCCCATCGGAGGACCACTGGCCCTATAAGGCGCGCGAAGGGTGGTTGGACAGCACAGGAGGTTGCTGAGTTTTTTCCTGATAGATCAGAAGTTCAGTGTCTGCACAGATGGCAGAAAGTTCTTAATCCAGAACTTGTTAAAGGACCTTGGACACAAGAGGAGGATGATAAAATTGTTGAACTAGTGTCAAAATATGGGCCTACAAAATGGTCTTTGATAGCCAAGTCTTTACCTGGTCGAATAGGCAAACAATGTCGAGAGCGGTGGCACAATCATCTTAACCCTGACATAAAGAAGGATGCCTGGACTTTGGAGGAGGAATTAGCCCTGATGAATGCTCATCGTATACATGGGAACAAATGGGCTGAAATAGCCAAGGTCCTTCATGGAAGGACAGACAATGCAATAAAGAATCACTGGAATAGTTCTTTGAAGAAAAAGTTAGAATTTTATTTAGCTACAGGAAGACTTCCTCCAATTCCCAAGAATAGTCCACAAGTTGCTGTCAAAGATACAATTAGACGTTCTGCTAGCAAAACACTACTTGTTTGTTCAAATAAAGAATTAAATGCAGTTGTTGAAACATCATCTGAAACTACAGCCATTAGTAAGCTAGATGACAGTGGCAGGAATCAGTTTGAGTCCTCAGGAACAGTTAGAGAAGTTGGTGACTGTTCAAGTGTTCCAGCAAATGAATCTGCCGATTCTGACTGTGTAGAATGCAAGCCTGGACCATCCAACATCGATCTTGGCT 892 0.4372 MAEVKSEECCQENKQSTAASCSSVSEGSGSAIHKSPGICSPASTSPSHRRTTGPIRRAKGGWTAQEVAEFFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLHGRTDNAIKNHWNSSLKKKLEFYLATGRLPPIPKNSPQVAVKDTIRRSASKTLLVCSNKELNAVVETSSETTAISKLDDSGRNQFESSGTVREVGDCSSVPANESADSDCVECKPGPSNIDLG 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01392 297 Gene3D - 93 144 - -
Cca07g01392 297 MobiDBLite consensus disorder prediction 37 51 - -
Cca07g01392 297 PANTHER MYB PROTEIN-RELATED 18 286 - -
Cca07g01392 297 Pfam Myb-like DNA-binding domain 96 154 - -
Cca07g01392 297 SMART sant 92 141 IPR001005 -
Cca07g01392 297 SMART sant 144 192 IPR001005 -
Cca07g01392 297 ProSiteProfiles Myb-like domain profile. 88 139 IPR001005 -
Cca07g01392 297 Gene3D - 146 218 - -
Cca07g01392 297 Gene3D - 50 92 - -
Cca07g01392 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 143 IPR017930 -
Cca07g01392 297 CDD SANT 147 190 IPR001005 -
Cca07g01392 297 MobiDBLite consensus disorder prediction 253 268 - -
Cca07g01392 297 SUPERFAMILY Homeodomain-like 62 97 IPR009057 -
Cca07g01392 297 MobiDBLite consensus disorder prediction 253 297 - -
Cca07g01392 297 MobiDBLite consensus disorder prediction 11 30 - -
Cca07g01392 297 PANTHER MYB-RELATED PROTEIN B-LIKE 18 286 - -
Cca07g01392 297 SUPERFAMILY Homeodomain-like 90 186 IPR009057 -
Cca07g01392 297 MobiDBLite consensus disorder prediction 1 59 - -
Cca07g01392 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 194 IPR017930 -
Cca07g01392 297 CDD SANT 95 139 IPR001005 -
Cca07g01392 297 ProSiteProfiles Myb-like domain profile. 140 190 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01392 Cca-Chr7 36535369 36541769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01392 2 282 MYB Transcription Factor Family AT3G09370 62.376 8.75e-124 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca07g01392 Myb_DNA-bind_6 1.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01392 K09422 - gmx:778081 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01392 07 36535369 36541769 Cca07g01392 07 36535369 36541769 ECH