Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01367 ATGGCTGAAGCGGAGCCTTCTCGGGTGCTCCGGAGCCTCACCCGAACCGCGGCCCAAATCACCAACCTCTCCGCCTTCAGGCCCGTCGTCAAGGCCCAATGCTGCGACCTCGCTCGCCGAATAAGGTTCCTTGCCCCGCTCTTCCACGAGCTGCAAGACGACGTCGTGTTGGCCCGCGCGGTTTCCTCTCACGCTCTCGCGTCTCTCGAAGATGCTCTCTTCAGGGCCAGGGAACTGCTCCAATTCGCCGCTTGCGGAAGCCAGGTTTTCATGGTGCTGGATAGGGAACAGCTTAAGTACAAGTTCACTGATGTTGCTGTGCGTTTTGAGCATGCTATAAGCAGGATCTCAATTGACGAGCTTGATGTTTCTGAAGAAATTAAGGAGCAGGTTGCTCTTGTGACCATTCAGTTTAGAAGAGCCAAAGAGCAGTTTGATCCACCGGGTCTTCAGCTTTATGAGCACCTGTTGTCTGTTTACAACCAGAGCTATGATGTAAATGCTGAAACTGCTGAGCTTCAGTTAATCTGTGAAAATCTACAATTTCTCAATGTGGATGACATCAAGCAAGAGTCACTCGCTCTACAAAAGATGGTTGTAGACAGGGGTGGTCATTCTCAGAAAAGCATACGGGATATGTCATTAATAGTGCTGAAAAAAATCCAAGATTTCTTGGTGATGGAATGTGGAAACAATACTGTGTCACTAAATGAGGATTTCTTTTGTCATACTAATGAGTCTTATGTGAAACTATGTTCACAATCACTGGTTATACCCGATGAGTTTCGCTGCCCAATCTCTCTAGAGCTAATGAAAGATCCTGTTATCATTTGCACAGGGCAGACATATGACCGATCTTGCATAAAGAAATGGCTTGAAGCAGGGCATGGAACATGTCCCAAGACTCAACAGATTCTTTCCAGCCCCATCCTCATACCCAACCATGCTTTATATGGCTTGATATCAGGTTGGTGTGAGGAAAATGGAGTGGAACCACCTAAAAGGTTAGGAAATTTATGGCTTAGTATGACAACATCAGATGGCTCTTCTGAATTAGTAGATCTCGATATCTTAGTGAGCAGACTTTCTTCCAGTGATACTGAGGATCGACAATGTGCAGCAGGGGAGCTCCGACTTCTTGCCAAGCAAAATGGTCAAAATCGAATTCTGATTGCTGAAGCTGGTGCCATTCCCCACCTTGTTGCTCTCCTCTATGCAGCTGATGCTGGCACCCAAGAGCATGCAGTTACTGCTCTTCTGAACTTGTCTATCTTTGCAGATAATAAAGAGCGCATCATGGCTTCTTCGGCTGTGCCAGGCATCCTCTACGTGCTAGAAAATGGTAGTATGGAAGCTCGGGAAAATGCAGCAGCCACCTTTTTCAGCCTCTCTGGGGTGGATGAGAACAGAGCGGCAATTGGTGCATCTGGAGCAATCCAGGCATTAGTTACTCTATTCTGTGAGGGAAGTCAAAGGGGGAAGGTGGATGCAGCAAAAGCGCTATTCAATCTATGTTTATCTCAAGGGAACAAAGGACGGGCAATTAGGGCTGGTATTGTGCCTAAGTTGATAGAAATGCTAACAGAACCTGCTGGGGAGATGAGGGACGAGGCATTGGCAATAATGGCTGTAGTAGTTAGCCATCCTGATGGAAAAGCAGCAATTGGATCTATGAATGTTGTGTCCACTTTGGTGGAATTAATTAGTAATGGACCTCCTAGGAACAAAGAAAATGCAACTTCAGTGTTGGTGCTCCTCTGTAACGGAGATCCTCTACTATTGTCAATTGTCAGTTCACTTGGGGTGATTAATCCTCTCTTGGACCTGGCAGAAAATGGTTCAGAAAGGGCTAAGCGGAAAGCTGCCCAACTACTTGAGTTGATAGGAAACCATTGTGAATATACTAGGAAAACTGCCAACTAG 1923 0.4644 MAEAEPSRVLRSLTRTAAQITNLSAFRPVVKAQCCDLARRIRFLAPLFHELQDDVVLARAVSSHALASLEDALFRARELLQFAACGSQVFMVLDREQLKYKFTDVAVRFEHAISRISIDELDVSEEIKEQVALVTIQFRRAKEQFDPPGLQLYEHLLSVYNQSYDVNAETAELQLICENLQFLNVDDIKQESLALQKMVVDRGGHSQKSIRDMSLIVLKKIQDFLVMECGNNTVSLNEDFFCHTNESYVKLCSQSLVIPDEFRCPISLELMKDPVIICTGQTYDRSCIKKWLEAGHGTCPKTQQILSSPILIPNHALYGLISGWCEENGVEPPKRLGNLWLSMTTSDGSSELVDLDILVSRLSSSDTEDRQCAAGELRLLAKQNGQNRILIAEAGAIPHLVALLYAADAGTQEHAVTALLNLSIFADNKERIMASSAVPGILYVLENGSMEARENAAATFFSLSGVDENRAAIGASGAIQALVTLFCEGSQRGKVDAAKALFNLCLSQGNKGRAIRAGIVPKLIEMLTEPAGEMRDEALAIMAVVVSHPDGKAAIGSMNVVSTLVELISNGPPRNKENATSVLVLLCNGDPLLLSIVSSLGVINPLLDLAENGSERAKRKAAQLLELIGNHCEYTRKTAN 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01367 640 CDD RING-Ubox_PUB 262 304 IPR045210 -
Cca07g01367 640 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Cca07g01367 640 Gene3D - 494 639 IPR011989 -
Cca07g01367 640 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
Cca07g01367 640 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 628 - -
Cca07g01367 640 SMART arm_5 466 506 IPR000225 GO:0005515
Cca07g01367 640 SMART arm_5 507 547 IPR000225 GO:0005515
Cca07g01367 640 SMART arm_5 590 630 IPR000225 GO:0005515
Cca07g01367 640 SMART arm_5 384 424 IPR000225 GO:0005515
Cca07g01367 640 SMART arm_5 548 588 IPR000225 GO:0005515
Cca07g01367 640 Gene3D - 336 485 IPR011989 -
Cca07g01367 640 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Cca07g01367 640 Coils Coil 607 627 - -
Cca07g01367 640 Gene3D - 9 119 IPR036537 GO:0007166
Cca07g01367 640 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 331 IPR013083 -
Cca07g01367 640 SUPERFAMILY ARM repeat 354 628 IPR016024 -
Cca07g01367 640 SUPERFAMILY RING/U-box 258 334 - -
Cca07g01367 640 Pfam Armadillo/beta-catenin-like repeat 467 505 IPR000225 GO:0005515
Cca07g01367 640 Pfam Armadillo/beta-catenin-like repeat 386 423 IPR000225 GO:0005515
Cca07g01367 640 PANTHER U BOX DOMAIN-CONTAINING 7 628 - -
Cca07g01367 640 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 395 437 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01367 Cca-Chr7 35798884 35810121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01367 3 639 U-box Gene Family AT3G46510 49.377 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01367 - - var:108326899 992.26