Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01362 ATGGAAGATGCACACACTTTGGCGGTTGCTGAGAGAGAGATGTGGCTGAATAGTGACCAAGACGAGTTCCTAGGTGTCAACGAGGCTTCCATGTTCTACGCTGATTTCCCTCCTCTCCCTGATTTCCCGTGCATGtcatcgtcgtcatcatcatcttcaGCTCCACCACTTCCTGTGAAAACCATGACATGTTccaccacaacaacaaccaccaccaccacTTCCTCATCTTCCTCTTCATCTTCTTGGGCCATGTTAAAGTCAGATTTTGAGGAAGATGCCGAGAAAAACCATTGCAACCCTTACATGCATGACCATCTTGATGCAACGGCTTTATCCTCCACCGCTTCCATGGAGGTATCTCAGCAGCAGAACCCTGATCCAGGCCTTGTAGGCACTGTTGGAGAGTGCATGGATGATGTTATGGACACTTTTGGCTACATGGAGCTTTTGGAGGCCAATGATTTCTTCGACCCTGCCACTATTTTCCAGGATGATGAAAGTGAAAATCCTTTGGTAGACTTTTCAACACTGGAGGAGCAAGTGCCGTTGATGGAGGACCAACATGCAATGGAGCATCAAGAAGGGGCGAAAGGAGAGGAAGATCATGAGGTTCCTGTGTGTGAAGAAGGTGGTGTTGAAGGAAGTGTAGATGATGAAATGAGTAAGGTGTTCTTGGAGTGGCTCAAGTCTAACAAGGATAGTGTTTCTGCTAATGATTTGAGGAATGTGAAGCTCAAAAAGGCGACGATAGAAAGCGCGGCGAGGCGTTTAGGGGGAGGAAAAGAAGCCATGAAGCAGTTGCTGAAGCTGATTCTTGAGTGGGTTCAAACCAGCCATCTTCAGAATAAAAGGCGGAAGGAGAATAATGGTAGCATCAACACTGCACTTCAGGCACAGTTTCAGGATCCTGGTGGCCAGAACAACCAAACCACACAAACTGCTTCGTTTGCACCTGAATCAAACTCTTGTTTCAGCAACAACACACCCTGGTTGAGTCCTCAAGCTTTTGGCACAGATCAGGCTCCTATCATGCAATTTCCACAACACATGGTTGGGTATGTTGGTGACCCTTACACCAGTGGTGGTGCAGCTTCAAATAACAACCCTTATCAACCTGGTGCAGATCAATATAACATGTTGGAGTCAGCACATTCATGGCCTAATTCACAGTTCAATGTTGCTTCTCAATATAGCCAGTCTTTTGGGGAAAATGGTATTTTCCCAAATGGGGGTTTTGGCGGCTATGGCAATAATAATCAGTACCCTTATCAGTTTTTTCATGGCCCTGGTGATAGGTTGATGAGGTTGGGGCCCTCGGCTACCAAGGAAGCCAGGAAGAAGAGAATGGCTAGGCAGAGAAGGTTTATGACTCATCATAGGCATCACAATAGTAATAACCACCAGAATAATCATGGATCTGACCCTAGATTGGGGAGTGATAATTGCACCACTGTTATGGCTGCACCTCATGCAAATCCTGCAGCCAATTGGATGTACTGGCAGGCTATGACGGGTGGCACGGCCGGTCCTTTGGCGCCGGTGGCTCCAGCCGAGTCGCCGGCAGCGGACCGGTCGGCCATGCAGACACAGAATGGTCATCAGGGTCGAGCTGCATCAGATAGGAGGCAGGGTTGGAAGCCTGAGAAGAACTTGAGGTTCCTTCTGCAGAAGGTGTTGAAGCAAAGCGATGTGGGAAGTTTGGGGAGAATAGTTTTGCCAAAAAAAGAGGCAGAAACCCATTTGCCAGAGCTGGAGGCAAGAGATGGAATTTCCATAACCATGGAAGACATTGGAACTTCACGAGTTTGGAACATGCGCTATAGCACCAGATACTGGCCAAACAACAAAAGCAGAATGTATTTGCTCGAGAACACTGGCGACTTTGTGAGAGCCAATGGACTCCAAGAGGGAGATTTCATAGTGATATATTCTGATGTGAAGTGTGGCAAATATATGATAAGAGGAGTGAAAGTGAGGCAACAAGGTCTGAAACCAGAGACGAAGAAAGCAGGAAAATCGCAGAAAAACCAGCATGGAACTAATGCAGCAACTACAGCTGTTACTGCTGCAAATAATGGCACGCCATCGTCACCGAAGCAAAAAGCTGAAAAAAAGTAG 2121 0.4602 MEDAHTLAVAEREMWLNSDQDEFLGVNEASMFYADFPPLPDFPCMSSSSSSSSAPPLPVKTMTCSTTTTTTTTTSSSSSSSSWAMLKSDFEEDAEKNHCNPYMHDHLDATALSSTASMEVSQQQNPDPGLVGTVGECMDDVMDTFGYMELLEANDFFDPATIFQDDESENPLVDFSTLEEQVPLMEDQHAMEHQEGAKGEEDHEVPVCEEGGVEGSVDDEMSKVFLEWLKSNKDSVSANDLRNVKLKKATIESAARRLGGGKEAMKQLLKLILEWVQTSHLQNKRRKENNGSINTALQAQFQDPGGQNNQTTQTASFAPESNSCFSNNTPWLSPQAFGTDQAPIMQFPQHMVGYVGDPYTSGGAASNNNPYQPGADQYNMLESAHSWPNSQFNVASQYSQSFGENGIFPNGGFGGYGNNNQYPYQFFHGPGDRLMRLGPSATKEARKKRMARQRRFMTHHRHHNSNNHQNNHGSDPRLGSDNCTTVMAAPHANPAANWMYWQAMTGGTAGPLAPVAPAESPAADRSAMQTQNGHQGRAASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYSTRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQQGLKPETKKAGKSQKNQHGTNAATTAVTAANNGTPSSPKQKAEKK 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01362 706 MobiDBLite consensus disorder prediction 663 706 - -
Cca07g01362 706 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 11 693 IPR044800 GO:0003700
Cca07g01362 706 Pfam B3 DNA binding domain 557 655 IPR003340 GO:0003677
Cca07g01362 706 ProSiteProfiles B3 DNA-binding domain profile. 556 660 IPR003340 GO:0003677
Cca07g01362 706 SUPERFAMILY DNA-binding pseudobarrel domain 555 653 IPR015300 -
Cca07g01362 706 MobiDBLite consensus disorder prediction 46 81 - -
Cca07g01362 706 MobiDBLite consensus disorder prediction 458 482 - -
Cca07g01362 706 SMART B3_2 556 660 IPR003340 GO:0003677
Cca07g01362 706 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 11 693 - -
Cca07g01362 706 MobiDBLite consensus disorder prediction 301 320 - -
Cca07g01362 706 MobiDBLite consensus disorder prediction 524 538 - -
Cca07g01362 706 Gene3D - 547 666 IPR015300 -
Cca07g01362 706 CDD BfiI_C_EcoRII_N_B3 554 657 - -
Cca07g01362 706 MobiDBLite consensus disorder prediction 515 546 - -
Cca07g01362 706 MobiDBLite consensus disorder prediction 675 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01362 Cca-Chr7 35502030 35506570 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01362 12 691 B3 DNA Binding Superfamily AT3G24650 48.767 8.64e-173 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca07g01362 B3 6.3e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01362 - - gmx:100795226 1077.39