Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01361 ATGTCAATGCCGAGGCAAGCCTTGAGCAACCAAAATCACAACCAAATGTCGAGGCAAGCTTTCATCACAAACCATCACCATCTTCACTATGttcttcttcttctctttgcacttcttgttcctcttTCCTTTGCTGCAAATGATGAAGTTACTGCATTGGTTTCATGGATGCATAGCTCCTCCTCCGATGTTCCTTCAGCTTTTTCTAGTTGGAACCCTTTGGACTCCAATCCTTGCAAATGGTCTTACATCAAATGCTCTTCACCAAGCCTTGTTGTCACTGAGATAACCATTCAAAATGTTGAGTTAGCACTTCCCTTCCCTTCAAAAATCTCTTCTTTTCCCTTCCTTCAAAAGCTGGTCATTTCTGGGGCTAACCTCACTGGAACTATCTCGGCTGACATAGGGAACTGCCCTGAGCTTGTAGTCCTTGACCTTAGCTCAAATAGTCTTCAGGGTGGCATTCCTTCAAGTGTTGGAAAACTCAAAAGCCTCCAAAATCTGAGCTTGAACTCTAACCTTCTCACTGGGCCAATCCCAAGTGAGCTTGGTGATTGTGTCAATCTCAAGAACCTTGACATCTTTGATAATAGTCTTAGTGGGGAAATTCCAGTGGAACTGGGAAAGTTGTCAAATTTGGAGGTTCTAAGAGCAGGAGGGAACAGTGACATTATGGGGAAGATTCCAGATGAACTAGGAGATTGTAAGAATTTAACAGTGTTAGGTCTTGCTGACACAAAAATTTCTGGCTCATTGCCTGCTTCATTGGGTAAGCTAACCATGCTTCAGACCTTGTCTATTTATAGTACTATGCTCTCTGGTGAGGTTCCTCATGAAATTGGGAACTGTTATGAGCTTGTGAACTTGTTTTTGTATGAGAATGACCTCTCTGGCTCTCTGCCAAGGGAGCTTGGTAAGCTTCAGAAGCTGGAAAAGATGCTGCTGTGGCAAAACAACTTTGTTGGGGAAATTCCGGAGGAAATTGGAAACTGCAGAAGCTTGAAGATTCTTGATGTGTCGTTGAATTTTCTCTCTGGTGGAATACCTCAGAGTTTGGGGCAGCTCTCAAATCTTGAAGAGCTTATGCTGAGTAACAATAACATTTCTGGTTCAATACCACCAGCTCTCTCCAATCTCACAAACCTCATACAGTTGCAGCTGGATACTAATCAGCTATCAGGTCCAATTCCACCTGAGCTTGGAAGCTTGACAAAGCTAACAGTGTTTTTTGCTTGGCAGAACAAACTTGAAGGTGGCATTCCATCAGAATTAGGAGGTTGTGGAAGCCTTGAGGCTTTGGATTTGTCATACAATGCACTCACTCATAGCTTACCCCCAGGTCTGTTTAAACTTCAAAATTTAACAAAGCTTTTGCTAATCTCTAATGATATTTATGGTCCAATTCCTCCTGAGATTGGCAACTGCAGTTCTCTCATTCGCCTCAGGCTCGTAGACAACAGAATCAGTGGGGACATACCAAGAGAAATTGGCCTCCTCAGTAGCCTCAATTTCCTTGATCTATCTGGAAATCACCTTACTGGGTCTGTGCCAATTGAGATTGGAAACTGTAAAGAACTACAAATGCTGAATCTGAGCAATAACTCACTTTCTGGTGTTTTGTCTAGTTATTTGTCTTCTCTCACAAGGCTAGAGGTGTTGGATGTTTCTATGAATAACTTTTCTGGTGAGGTTCCAATGAGTATAGGTCAACTCACTTCACTTCTTAGAGTAATCCTTAGCAAAAACTCTTTCTCTGGGCCAATTCCCTCCTCACTTGGGCAATGTCTTGGTCTTCAACTTCTGGACCTTAGCAGCAACAAGTTCTCAGGGAGCATCCCACCAGAACTGCTTCAAATTGAAGCACTAGATATTTCTCTAAATTTGAGTCACAACGCATTATCTGGAATAATCCCACCAGAGATTTCTTCTCTGAACAAGCTCTCAGTTCTAGACCTTTCACACAACAATTTTGAAGGTGACTTGATGGCATTTTCAGCCCTTGAAAATCTTGTTTCTCTGAACATTTCCTACAACAAGTTCACTGGCTATCTACCAGACATCAAGTTATTCCACCAACTATCAGCAACAGACATGGCTGGAAACCAAGGTTTGTGTCCTAATGGTCATGATGCATGTTTTGTTAGCAATGCTGCAATGACAAAAATGCTGAATGGAACTAATTCTAAGAAGTCAGAGATAATCAAACTTGCCATTGGATTGCTCAGTGCCTTGACAGTTGTGATGGCGATTTTCGGAATTGTTACTGTCTTTCGAGCAAGGAAAATTATTCAAGCAGACAATGATTCTGAGATGGGAGGAGATTCATGGCCTTGGCAGTTCACACCATTCCAAAAGGTAAACTTCTCTGTGGAGCAAGTCTTGAAGTGTTTGGTGGAATCCAATGTGATTGGAAAGGGGTGCTCAGGGATCGTTTATCGTGCAGAAATGGAAAATGGCGATGTCATTGCTGTGAAAAGGCTATGGCCAACAACAATGGCTGCAAGATATGACGGTCAAAGTGACAAGTTAGCTGTTAATGGAGGGGTGCGTGATTCCTTTTCAGCCGAGGTGAAAACTCTCGGTTCAATTCGCCACAAGAACATTGTGAGGTTCTTGGGGTGCTGTTGGAACAGAAATACAAGATTGCTTATGTATGATTACATGCCAAATGGGAGCCTTGGAAGTCTACTTCATGAAAGAAGTGGAAACTGCTTGGAATGGGAAATCAGGTTTAGGATAATACTAGGAGCAGCTCAAGGTGTGGCTTATTTGCACCATGACTGTGCTCCTCCCATTGTTCACAGGGACATCAAGGCCAACAACATCCTCATAGGCCCTGAATTTGAACCATACATTGCTGATTTTGGGCTTGCAAAACTAGTTGATGATGGAGACTTTGCAAGATCTTCTAGCACACTAGCTGGTTCCTATGGTTACATTGCTCCTGAGTATGGCTATATGATGAAGATAACAGAGAAAAGTGATGTTTATAGCTATGGTATTGTTGTACTAGAAGTACTAACTGGGAAGCAACCAATTGATCCAACAATACCTGATGGACTCCACATTGTTGATTGGGTAAGACAGAAGCGAGGTGGAGTTGAAGTGTTAGATGAAAGCCTGAGAGCTCGGCCAGAATCCGAAATTGAGGAAATGTTGCAGACATTAGGAGTGGCTTTGCTGTGTGTGAACTCAAGCCCTGATGACAGACCAACCATGAAAGATGTTGTGGCAATGATGAAGGAAATTAGGCAGGAGAGAGAGGAGTGTGTGAAAGTTGACATGCTTCTTGATGCATCTTCTGCAAATGATTATCAACAAGAAAGAAATCATGATCATTCCAATGGAGAACCAATGTCAATGTCAATGATAAGCACCAGCAGCAACACAAATCTGCATCTGCATTACTCACCCCGTCGCCCTCAAACACCAAACTAA 3438 0.4218 MSMPRQALSNQNHNQMSRQAFITNHHHLHYVLLLLFALLVPLSFAANDEVTALVSWMHSSSSDVPSAFSSWNPLDSNPCKWSYIKCSSPSLVVTEITIQNVELALPFPSKISSFPFLQKLVISGANLTGTISADIGNCPELVVLDLSSNSLQGGIPSSVGKLKSLQNLSLNSNLLTGPIPSELGDCVNLKNLDIFDNSLSGEIPVELGKLSNLEVLRAGGNSDIMGKIPDELGDCKNLTVLGLADTKISGSLPASLGKLTMLQTLSIYSTMLSGEVPHEIGNCYELVNLFLYENDLSGSLPRELGKLQKLEKMLLWQNNFVGEIPEEIGNCRSLKILDVSLNFLSGGIPQSLGQLSNLEELMLSNNNISGSIPPALSNLTNLIQLQLDTNQLSGPIPPELGSLTKLTVFFAWQNKLEGGIPSELGGCGSLEALDLSYNALTHSLPPGLFKLQNLTKLLLISNDIYGPIPPEIGNCSSLIRLRLVDNRISGDIPREIGLLSSLNFLDLSGNHLTGSVPIEIGNCKELQMLNLSNNSLSGVLSSYLSSLTRLEVLDVSMNNFSGEVPMSIGQLTSLLRVILSKNSFSGPIPSSLGQCLGLQLLDLSSNKFSGSIPPELLQIEALDISLNLSHNALSGIIPPEISSLNKLSVLDLSHNNFEGDLMAFSALENLVSLNISYNKFTGYLPDIKLFHQLSATDMAGNQGLCPNGHDACFVSNAAMTKMLNGTNSKKSEIIKLAIGLLSALTVVMAIFGIVTVFRARKIIQADNDSEMGGDSWPWQFTPFQKVNFSVEQVLKCLVESNVIGKGCSGIVYRAEMENGDVIAVKRLWPTTMAARYDGQSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERSGNCLEWEIRFRIILGAAQGVAYLHHDCAPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGVEVLDESLRARPESEIEEMLQTLGVALLCVNSSPDDRPTMKDVVAMMKEIRQEREECVKVDMLLDASSANDYQQERNHDHSNGEPMSMSMISTSSNTNLHLHYSPRRPQTPN 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01361 1145 SMART serkin_6 797 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01361 1145 SMART LRR_typ_2 162 186 IPR003591 -
Cca07g01361 1145 SMART LRR_typ_2 499 523 IPR003591 -
Cca07g01361 1145 SMART LRR_typ_2 571 595 IPR003591 -
Cca07g01361 1145 SMART LRR_typ_2 379 403 IPR003591 -
Cca07g01361 1145 SMART LRR_typ_2 355 378 IPR003591 -
Cca07g01361 1145 SMART LRR_typ_2 307 331 IPR003591 -
Cca07g01361 1145 SMART LRR_typ_2 667 689 IPR003591 -
Cca07g01361 1145 SMART LRR_typ_2 427 451 IPR003591 -
Cca07g01361 1145 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 17 1104 - -
Cca07g01361 1145 Gene3D Ribonuclease Inhibitor 48 159 IPR032675 -
Cca07g01361 1145 Gene3D Transferase(Phosphotransferase) domain 1 888 1104 - -
Cca07g01361 1145 Gene3D Ribonuclease Inhibitor 348 447 IPR032675 -
Cca07g01361 1145 Pfam Leucine rich repeat N-terminal domain 46 87 IPR013210 -
Cca07g01361 1145 MobiDBLite consensus disorder prediction 1101 1145 - -
Cca07g01361 1145 Pfam Protein tyrosine and serine/threonine kinase 800 1078 IPR001245 GO:0004672|GO:0006468
Cca07g01361 1145 Gene3D Phosphorylase Kinase; domain 1 781 887 - -
Cca07g01361 1145 SUPERFAMILY RNI-like 372 702 - -
Cca07g01361 1145 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RCH1 17 1104 - -
Cca07g01361 1145 MobiDBLite consensus disorder prediction 1116 1145 - -
Cca07g01361 1145 Gene3D Ribonuclease Inhibitor 453 716 IPR032675 -
Cca07g01361 1145 Gene3D Ribonuclease Inhibitor 252 347 IPR032675 -
Cca07g01361 1145 SUPERFAMILY Protein kinase-like (PK-like) 780 1080 IPR011009 -
Cca07g01361 1145 ProSitePatterns Serine/Threonine protein kinases active-site signature. 932 944 IPR008271 GO:0004672|GO:0006468
Cca07g01361 1145 ProSitePatterns Protein kinases ATP-binding region signature. 803 825 IPR017441 GO:0005524
Cca07g01361 1145 ProSiteProfiles Protein kinase domain profile. 797 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01361 1145 SUPERFAMILY L domain-like 47 321 - -
Cca07g01361 1145 ProSiteProfiles Leucine-rich repeat profile. 357 380 IPR001611 GO:0005515
Cca07g01361 1145 Gene3D Ribonuclease Inhibitor 160 251 IPR032675 -
Cca07g01361 1145 Pfam Leucine rich repeat 332 392 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01361 Cca-Chr7 35478659 35482949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01361 44 1096 Receptor kinase-like Gene Family AT5G56040 47.895 0.0 959
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca07g01361 PK_Tyr_Ser-Thr 1.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01361 - - gmx:100794698 1961.42