Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01359 ATGGCGTTTCTGAAGCCTTTCTCTCTCCACATTTCCATGTCcttgttcttgctgttgttcttcttcctcttcttttgcttctGCAAAGCCAGTACCACCCCCACAAAGTCACTGTCCCCTTCTTCACCCTCCACTTCTTCCTCTGATGTTGAACTTCTCTTGGGAAAAATCAAAGCTTCTCTGCAAGGTGACACTGACAACCTTGTTCTCTCTTCATGGAACACTTCTATCCCACTTTGCCAGTGGAGAGGCCTCAAATGGGTATTCTCCAATGCCTCTCCTCTCTCATGCACTGACTTGTCCTCACCACAATGGAGCAATGTTACCCTTCACAAGGACCcttctcttcacttgctttctcttcggctcccttctGCCAACCTCTCTGGTTCTCTCCCCAGAGAGCTTGGGGAGTTCCCTATGCTTCAAAGTCTCTACCTTAACATAAACTCATTGAAGGGTACCATCCCTCTTGAGATTGGGTATAGCACCTCCCTCTCTGACATTGATTTGAGTGACAATATGTTAAGTGGGGTTCTTCCACCATCCATTTGGAACTTGTGTGAGAGGCTTGTTTCCATTAGGATTCATGGTAACTCCCTATCTGGGTCTGTTTCTGAGCCAGCATTGCCTGACTCATCTTGTAAGAATTTGCAGTTTCTTGACTTGGGTGGCAACAAGTTTTCTGGGAGTTTCCCTGAGTTCATCACCAAGTTTGGTGGGCTAAAGGAGCTTGACTTGGGGGAGAACATGTTCATGGGTACAATTCCTCAAGGCCTAGTTGGGTTAAGGCTTGAAAAATTGAACCTTTCACATAATAATTTTAGTGGGGTGTTGCCTTTCTTTGGGGAATCCAAGTTTGGTGTGGATGCTTTTGAAGGGAATAGCCCTGCCTTGTGTGGGCCACCTTTGGCAAGCTGTGCTAGGGCCTCTTCACTGAGTTCTGGTGCAGTTGCTGGCATTGTTATTAGTCTCATGACAGGAGCTGTGGTTTTGGCTTCTTTGCTGATTGGTTATATGCAGAACAAGAAGAGAAAGGGAAGTGGGGAGAGTGAAGATGAGTTGAATGATGAAGAGGAGGATGAAGAGAATGGTGGTAATGCTATTAGTGGAGCTGGTGAGGGGAAGCTCATGTTGTTCCCTGGAGGTGAGAATTTGACATTGGATGATGTGTTGAATGCAACTGGACAAGTTTTGGAGAAGACTTGTTATGGGACTGCTTATAAGGCAAAGCTTGCTGATGGAGGCACCATTGCTTTGAGGCTATTGAGAGAAGGTAGCTGCAAAGATAAGGTTTCATGCTTGTCGGTTATAAAGCAATTGGGGAAAATTCGCCATGAGAATTTGATTCCTTTGAGAGCTTTCTATCAGGGGAAGAGAGGGGAGAAGCTCCTTATCTATGACTATCTGCCTCTCAGAACCCTTCATGATCTTTTACATGAACCAAAAACCGGAAAACCAGTGCTGAACTGGGCCAGGCGACACAAGATAGCATTGGGGATAGCGCGAGGACTAGCATATCTTCACACAGGACTTGAAGTTCCCATCACTCATGCAAACGTAAGGTCCAAGAATGTGCTCGTGGACGACTTCTTCGCAGCCAGGCTGACCGATTTTGGCCTTGACAAGCTGATGATTCCCTCCATAGCCGACGAGATGGTGGCGCTGGCCAAGACCGACGGCTACAAGGCGCCGGAGCTGCAAAGAATGAAGAAGTGCAACTCCAGGACAGATGTCTATGCATTCGGCATCCTGCTGCTTGAAATCTTGATAGGGAAGAAGCCAGGGAAGAATGGAAGAAGCGGCGAGCACGTGGACTTGCCTTCGATGGTGAAGGTGGCGGTGTTGGAGGAGACAACGATGGAAGTGTTCGATGTGGAGCTCTTGAAAGGGATAAGGAGTCCAATGGAAGATGGGTTGGTGCAGGCACTGAAGCTGGCAATGGGGTGCTGTGCACCAGTGGCATCAGTTAGGCCAAGCATGGATGAAGTTGTGAGGCAGTTGGAGGAGAATAGGCCAAGGAACAGGTCTGCATTATACAGTCCTACAGAAACAAGAAGTGGGAGTGTTACCCCATTTTGA 2082 0.4606 MAFLKPFSLHISMSLFLLLFFFLFFCFCKASTTPTKSLSPSSPSTSSSDVELLLGKIKASLQGDTDNLVLSSWNTSIPLCQWRGLKWVFSNASPLSCTDLSSPQWSNVTLHKDPSLHLLSLRLPSANLSGSLPRELGEFPMLQSLYLNINSLKGTIPLEIGYSTSLSDIDLSDNMLSGVLPPSIWNLCERLVSIRIHGNSLSGSVSEPALPDSSCKNLQFLDLGGNKFSGSFPEFITKFGGLKELDLGENMFMGTIPQGLVGLRLEKLNLSHNNFSGVLPFFGESKFGVDAFEGNSPALCGPPLASCARASSLSSGAVAGIVISLMTGAVVLASLLIGYMQNKKRKGSGESEDELNDEEEDEENGGNAISGAGEGKLMLFPGGENLTLDDVLNATGQVLEKTCYGTAYKAKLADGGTIALRLLREGSCKDKVSCLSVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPLRTLHDLLHEPKTGKPVLNWARRHKIALGIARGLAYLHTGLEVPITHANVRSKNVLVDDFFAARLTDFGLDKLMIPSIADEMVALAKTDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGKKPGKNGRSGEHVDLPSMVKVAVLEETTMEVFDVELLKGIRSPMEDGLVQALKLAMGCCAPVASVRPSMDEVVRQLEENRPRNRSALYSPTETRSGSVTPF 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01359 693 Pfam Leucine rich repeat 217 275 IPR001611 GO:0005515
Cca07g01359 693 Gene3D Ribonuclease Inhibitor 50 190 IPR032675 -
Cca07g01359 693 SUPERFAMILY Protein kinase-like (PK-like) 397 669 IPR011009 -
Cca07g01359 693 Gene3D Ribonuclease Inhibitor 191 309 IPR032675 -
Cca07g01359 693 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 16 693 - -
Cca07g01359 693 SUPERFAMILY L domain-like 80 281 - -
Cca07g01359 693 Pfam Protein tyrosine and serine/threonine kinase 397 668 IPR001245 GO:0004672|GO:0006468
Cca07g01359 693 MobiDBLite consensus disorder prediction 672 693 - -
Cca07g01359 693 ProSiteProfiles Protein kinase domain profile. 393 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01359 693 MobiDBLite consensus disorder prediction 674 693 - -
Cca07g01359 693 Gene3D Transferase(Phosphotransferase) domain 1 472 681 - -
Cca07g01359 693 Gene3D Phosphorylase Kinase; domain 1 382 469 - -
Cca07g01359 693 MobiDBLite consensus disorder prediction 345 369 - -
Cca07g01359 693 PANTHER KINASE-LIKE PROTEIN TMKL1-RELATED 16 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01359 Cca-Chr7 35403985 35407229 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01359 12 693 Receptor kinase-like Gene Family AT3G24660 72.621 0.0 943
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca07g01359 PK_Tyr_Ser-Thr 3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01359 - - gmx:100814814 1178.31