Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01357 ATGTCATCAGGGCAGAGAAGGTCATCAAGAGCTTCAAAGTTCACAGAGAATGAGATTAATGATCTTGTCTCTAGGTTACAAGTTCTGCTTCCACAAGTGAACCAAAGAGGAAACTCAAGGCAATCAGCGTCGAAGATTTTGCAGGAAACTTGTTGTCATATTAGGAGGCTGCAGGAAGAGGTGGAACAACTCAGTGAGAGGCTATCAGAGTTGATGGATTCTGTGGACATCAGTGACATTGACAGAAGCACTTTACAAAACTTTTTGCAACTATAA 276 0.4167 MSSGQRRSSRASKFTENEINDLVSRLQVLLPQVNQRGNSRQSASKILQETCCHIRRLQEEVEQLSERLSELMDSVDISDIDRSTLQNFLQL 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01357 91 PANTHER DNA BINDING PROTEIN 2 90 - -
Cca07g01357 91 Gene3D - 16 89 IPR036638 GO:0046983
Cca07g01357 91 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 75 IPR036638 GO:0046983
Cca07g01357 91 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 3 57 IPR011598 GO:0046983
Cca07g01357 91 Coils Coil 47 74 - -
Cca07g01357 91 Pfam Helix-loop-helix DNA-binding domain 18 58 IPR011598 GO:0046983
Cca07g01357 91 PANTHER DNA BINDING PROTEIN 2 90 IPR044172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01357 Cca-Chr7 35341572 35344397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01357 11 76 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 53.731 4.45e-18 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca07g01357 HLH 8.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01357 - - gmx:100810266 105.145