Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01355 ATGAAGACGCTGTTTCCCAATTTCTTCACTCTCACCATTCTGCTCCTGGCGCTGCTTTCAGCTCGCGTCAACGCAGTCAATGACAGTGAACACAAACTCACTGAATCGAGGGATGTGGTTGAAGACGAGATGTTGCGAGTGGAGAGCTTGAAGAATTCGTCAATGGCAGAAAGGTTAGTGGGTGCTTTGAATGAGCATGCAGTTGATAATCCAGAGGAGATTGCTTCTATGGTTGATGAGAGCATACGCAATCACACGGCGAGAAGGAATCTAAACTTCTTCTCATGCGGAACCGGGAACCCAATCGACGACTGCTGGCGGTGCGACAAGCGGTGGTACCTCCGGCGAAAGCGGCTAGCGAACTGCGGCATCGGGTTCGGGCGCAACGCCATCGGCGGCCGCGACGGACGCTACTACGTGGTAACCGACCCGAGCGACGACGACGCGGTTAACCCGAAACCGGGGACGCTCCGGCACGCGGTGATCCAAGACAGGCCCCTGTGGATCGTGTTCAAGCGCGACATGGTGATCACGCTGAAGCAGGAGCTGATTATGAACAGCTTCAAGACGATCGACGGGCGCGGCGTCAACGTCCACATCGCCTACGGCGCCTGCATCACCGTCCAGTTCATTACGAACGTCATCATCCACGGCCTCCACATCCACGACTGCAAGCCCACCGGAAACGCCATGGTCCGCAGCTCCCCCTCCCACTACGGCTGGAGGACCATCGCCGACGGCGACGGCATCTCCATCTTCGGCTCCAGCCACATTTGGATCGACCATAACTCTCTCTCCAGCTGCGCTGATGGCCTCATCGATGCCGTTATGGGCTCCACTGCTATTACCATTTCCAACAACTACTTCACCCACCACAACGAGGTAGTTATGTTGCTGGGTCACAGTGACTCTTACGTCCGCGACAAGCAGATGCAGGTCACCATTGCTTACAATCATTTTGGGGAGGGTCTTATCCAAAGAATGCCAAGGTGCAGACATGGGTATTTCCACGTGGTTAACAACGACTACACCCACTGGGTGATGTATGCAATTGGCGGCAGTGCTAACCCCACAATTAACAGCCAGGGCAACAGATACCTTGCTCCTCAGAACCCTTTTGCTAAAGAGGTGACAAAGAGAGTGGACACAGGGTCATCCATATGGAAAAGTTGGAATTGGAGGTCAGAGGGAGACCTTTTGCTCAATGGAGCCTTTTTCACTTCCTCAGGAGCAGGAGCTGCAGCAAGCTATGCTAGAGCCTCCAGTTTGGGGGCCAAATCCTCTTCTTTGGTTGGTACCCTCACCTCTGGAGCTGGTGTTCTTGCATGTCGCAGGGGTTTCACGTGTTAA 1350 0.5437 MKTLFPNFFTLTILLLALLSARVNAVNDSEHKLTESRDVVEDEMLRVESLKNSSMAERLVGALNEHAVDNPEEIASMVDESIRNHTARRNLNFFSCGTGNPIDDCWRCDKRWYLRRKRLANCGIGFGRNAIGGRDGRYYVVTDPSDDDAVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITVQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTIADGDGISIFGSSHIWIDHNSLSSCADGLIDAVMGSTAITISNNYFTHHNEVVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPQNPFAKEVTKRVDTGSSIWKSWNWRSEGDLLLNGAFFTSSGAGAAASYARASSLGAKSSSLVGTLTSGAGVLACRRGFTC 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01355 449 SMART amb_all 174 372 IPR002022 -
Cca07g01355 449 SUPERFAMILY Pectin lyase-like 77 443 IPR011050 -
Cca07g01355 449 Pfam Pectate lyase 183 364 IPR002022 -
Cca07g01355 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Cca07g01355 449 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Cca07g01355 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Cca07g01355 449 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Cca07g01355 449 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Cca07g01355 449 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Cca07g01355 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Cca07g01355 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Cca07g01355 449 Gene3D - 99 442 IPR012334 -
Cca07g01355 449 PANTHER PECTATE LYASE 14 446 - -
Cca07g01355 449 PANTHER PECTATE LYASE 18-RELATED 14 446 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01355 Cca-Chr7 35243654 35248920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01355 32 449 Polysaccharide Lyase AT4G13710 76.526 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01355 K01728 - gmx:100809277 803.897