Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01354 ATGGGAGATGAGGAAATGGTAGCCAAAGTTGGAGAAAGCCAAACAGAAGATGCATCAAGAGTTTTTCCATGTCTGTTCTGTTCAAGAAAGTTTTACAGTTCTCAAGCTTTAGGAGGGCACCAAAATGCTCACAAGAGAGAAAGAACAGCTGCAAGGAAGGCCAAGAGGGCTTCTGAGTACTCGTGTGTTTCCTTTCCTTCCCCAATGCCAACCCCTATGGTTTTTGCTCCAACCCATCTAGACCTTTTAAATCCTTCAGTGTTAATCACTGCTCACTCAGCAAGACTCCCTTGTCTCCCAAGCCATCAGATTTCAGAACAATTTGGATCAAATGGTGCACCTAGATTTGGCAATGCTCTGTTTTATGGGGAAAGTAGGTTTCATGATGATGGGAAGAGCTGCAACTACGACTGGGGGGACACATCTCAACATATACCACAGATAAGTAGCAATCAAAATCTTGGAAATAATGGTACAGAGAAAGATCAAAAGCTTGATTTATCTCTCCATTTGTAG 516 0.4264 MGDEEMVAKVGESQTEDASRVFPCLFCSRKFYSSQALGGHQNAHKRERTAARKAKRASEYSCVSFPSPMPTPMVFAPTHLDLLNPSVLITAHSARLPCLPSHQISEQFGSNGAPRFGNALFYGESRFHDDGKSCNYDWGDTSQHIPQISSNQNLGNNGTEKDQKLDLSLHL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01354 171 ProSitePatterns Zinc finger C2H2 type domain signature. 24 44 IPR013087 -
Cca07g01354 171 Gene3D Classic Zinc Finger 4 65 - -
Cca07g01354 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 22 49 IPR013087 -
Cca07g01354 171 PANTHER ZINC FINGER PROTEIN JAGGED 11 171 IPR045320 GO:0003700
Cca07g01354 171 MobiDBLite consensus disorder prediction 147 171 - -
Cca07g01354 171 PANTHER PROTEIN LATE FLOWERING 11 171 - -
Cca07g01354 171 SUPERFAMILY beta-beta-alpha zinc fingers 20 49 IPR036236 -
Cca07g01354 171 MobiDBLite consensus disorder prediction 147 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01354 Cca-Chr7 35172982 35174073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01354 2 171 C2H2 Transcription Factor Family AT5G48890 36.932 5.19e-17 72.4