Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01353 ATGGTGGTCATAGAACAGGAAGAGAGCGACCATCGAAACGCGAACCCTTCCAACGCCGGCGCCGGCCACGACGCCTCCGACGGCTTCGAAACCGCCAGCGACACCGATCTCGGCAGTGACGGCGACGGAGAAGATGACGGAGCCGGCAGCCGCGAAGAACAGAATCACGTCGagaagcatcagcatcagcagcagcagacagagcaAGCGCCGGAACACGATGTTCCTCAGAGCACTGAATCATCTGAGAATGCCTTGATCAATGAAGAAGAATCGAGACAGAAAGCATTGGATCAAGCAAATGAAGCAAAGGTAGAAGGGAATAAGCTTTTTGTAGATGGGAAGTATGAAGAGGCGTTATTGCAGTATGAACTTGCTTTACAAGTTGCACCAGACATCCCTTCATCTGTGGAAATACGTTCTATATGTCATTCAAACCGCGGTGTGTGCTTTCTGAAACTGGGAAAATATGAGAACACAATTAAAGAATGCACAAAAGCATTAGAACTGAATCCTGTATACGGTAAAGCTTTGGTAAGAAGAGGTGAAGCTCATGAAAAGCTTGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAAACCATTCGACGATTAGAGCCCCTTGCTGCAGAAAAACGGGAAAAGATGAAGGAGGAAATGATTGGAAAACTGAAAGATATGGGTAATTCTGTCTTGGGCCGCTTTGGGATGAGTGTAGACAACTTTAAAGCAGTCAAAGATCCAAACACTGGTTCCTATTCTATCTCATTCCAACGCTAA 819 0.4359 MVVIEQEESDHRNANPSNAGAGHDASDGFETASDTDLGSDGDGEDDGAGSREEQNHVEKHQHQQQQTEQAPEHDVPQSTESSENALINEEESRQKALDQANEAKVEGNKLFVDGKYEEALLQYELALQVAPDIPSSVEIRSICHSNRGVCFLKLGKYENTIKECTKALELNPVYGKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKTIRRLEPLAAEKREKMKEEMIGKLKDMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01353 272 SUPERFAMILY TPR-like 96 218 IPR011990 GO:0005515
Cca07g01353 272 Gene3D Tetratricopeptide repeat domain 49 236 IPR011990 GO:0005515
Cca07g01353 272 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 50 272 - -
Cca07g01353 272 Pfam Tetratricopeptide repeat 143 172 IPR001440 GO:0005515
Cca07g01353 272 MobiDBLite consensus disorder prediction 68 85 - -
Cca07g01353 272 MobiDBLite consensus disorder prediction 1 85 - -
Cca07g01353 272 Coils Coil 86 106 - -
Cca07g01353 272 ProSiteProfiles TPR repeat profile. 141 174 IPR019734 GO:0005515
Cca07g01353 272 MobiDBLite consensus disorder prediction 44 67 - -
Cca07g01353 272 SMART tpr_5 100 133 IPR019734 GO:0005515
Cca07g01353 272 SMART tpr_5 141 174 IPR019734 GO:0005515
Cca07g01353 272 SMART tpr_5 175 208 IPR019734 GO:0005515
Cca07g01353 272 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 50 272 - -
Cca07g01353 272 Pfam Tetratricopeptide repeat 176 208 IPR013105 -
Cca07g01353 272 ProSiteProfiles TPR repeat profile. 175 208 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01353 Cca-Chr7 35171511 35181808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01353 64 231 Calmodulin-binding Proteins AT3G25230 34.426 4.25e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01353 K24926 - gmx:100808386 402.519