Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01340 ATGATGAACGTGGCTTCCACAATCTTACTATTTCTACTCGCTTTCTCTTTCCACGCTTCACACTCTTCTTCTTCATCACTCACCAAGGGCTCATCCCTCTCCGTAGAAAAACCGAACGACGTTATCGTCTCCCCAAACGCCGTTTTCTCCGCTGGCTTCGTGGCCATCGGTGAAAACGCCTACACCTTCGCCATATGGTTCACACAAACTCAAACTCAAACTCATTCCCACCCCACAATGGTGTGGATGGCGAACCGTGAAAACCCCGTTAACGGAAAACGCTCCAAGCTCTCCCTCTTACAAACGGGTAACCTCGTATTATTCGACGCAGGTCAACAAAACGTGTGGTCCTCAAACACCGTTTCATTAGCCCTAACGGAGTTGCGTCTGAAAGACGATGGAAACCTCGTGTTGCATGAGTTTCAAGGAGGAAATTCTCTTCTTCTGTGGCAAAGCTTTGACTTCCCCACTCACACTCTCCTTCCGGGTCAACCTCTTACGCGACACACGCAACTCGTGTCTTCACGAAGCGAGAGTAACCACTCTTCCGGTTTCTACAAACTCTTCTTCGACGATGACAACGTTCTTCGTCTTATCTACGATGGCCCTGATGTTTCCAGCGTTTACTGGCCAAACCCGTGGCTGGTAAGTTGGGACGCTGGAAGGTCCACTTACAATAGCAGTAGATTTGCGGCGTTGGATTCACTCGGAAGATTCCTTTCATCCGATGATTTCACTTTCAAAACTTCTGATTATGGTGTTGTGAACAAGAGAAGGTTGAAGATTGATTGTGATGGCAACCTAAGAGTGTATACCATGCGTGATGATGAGTCAAATAGGTGGTTTGTTTCGTGGCAAGCTAGGGCTGACACGTGTAACATCCATGGGATTTGTGGGGCTAACAGTGTGTGTAGTTATGATGCTAAAGTTGGAAGGAAGTGTTCGTGTCTTCCTGGGCATAGAGTGAAGAATCATAGCGATTGGTCTTATGGATGTGAGCCCTTGTTTGTTTTCACTTGCAATGGAAGTGAGTCTAGCTTCTTGGAGATGCCGGGGGTTGAGATTTATGGCTATGATTCTAATTATTCTGAGCCGAATACTTTAGCCTATTGTGAGAATTTGTGCTTGGAAGATTGCAATTGTAAGGGGTTTCAGTACTCGTACAATGATGGTGAGAACCATTTCAAGTGCTACACCAAGTCACAACTTCTCAATGGGAGAAGTACACCGAATTTCCAAGGAACTATGTACTTGAGAGTTCCGAAAAATCATAGCCGTTTTCATCAGGAATCGTTTGTTGgTTTTGTGCAGATTCCAAGAGTGTATGCTGGAGATCATGTAAGCCGGATTTTGAGATTTTTTCTTTGGGTTGCTGTTGCGGTTGGTGGTTTTGAAACCGTTTGCATTTTTGTTGTGTGGGTTTTCGTAGTTAGGACACGCCAAAAGTCTTCTACAGATCAGAATGGGTACCATGTTGTGACTAATAGGTTCAGAAAATATAGTTATTCTGAATTGAAGAAGGCCACAAAGGGGTTCAGTGAAGAGATTGGAAAGGGTGGAGGAGGGGTTGTGTACAAAGGCATTTTATCAGATCAAAGACATGCTGCAATCAAGAGACTCTATGAAGCTAAACAAGGAGAAGGGGAATTCCTTGCTGAAGTCAGCATCATTGGAAGGCTTAACCACATGAACTTGATTGAAATGTGGGGTTATTGTGCTGAGGGAAAGCATAGGTTGTTGGTGTATGAGTACATGGAGAATGGTTCTTTGGCACAAAAACTCTCATCCAACACACTTGATTGGGATAAGAGATATAACATTGCTCTTGGAGTGGCAAGAGTTCTAGCATATTTGCATGAAGAATGTTTGGAGTGGATTTTGCATTGTGATATAAAACCCCAAAACATACTTCTTGATTCTAGTTATGAACCCAAGGTAGCAGATTTTGGGCTGTCCAAGCTACTAAACAGAAACAACCTCAACAATTCAAGTTTTTCAATGATCAGAGGAACAAGAGGGTATATGGCACCTGAATGGGTTCTGAACTTAGCAATCACCTCAAAGGTTGATGTTTACAGCTATGGAATTGTTCTTTTGGAGATGATAACTGGGAAGAGTCCAATCCAAAACATTGATGGAGAAGACTCGTATAATGGAAGGTTGGTAACTTGGGTGAGAGAGAAAAGAAGTGGCACGTCTTGGCTAGAGCACATAATTGATCCTGCAATTAAAACAAATTATGATGAATGTAAGATGGAGATTTTGGTTAAAGTGGCTTTGCATTGCGTTGAGGAAGACAAAGATATAAGACCCACCATGAGCCAAGTGCTGGAAATGCTTCAAAGCCATGAAAGTGATCCTCAGTAA 2367 0.4335 MMNVASTILLFLLAFSFHASHSSSSSLTKGSSLSVEKPNDVIVSPNAVFSAGFVAIGENAYTFAIWFTQTQTQTHSHPTMVWMANRENPVNGKRSKLSLLQTGNLVLFDAGQQNVWSSNTVSLALTELRLKDDGNLVLHEFQGGNSLLLWQSFDFPTHTLLPGQPLTRHTQLVSSRSESNHSSGFYKLFFDDDNVLRLIYDGPDVSSVYWPNPWLVSWDAGRSTYNSSRFAALDSLGRFLSSDDFTFKTSDYGVVNKRRLKIDCDGNLRVYTMRDDESNRWFVSWQARADTCNIHGICGANSVCSYDAKVGRKCSCLPGHRVKNHSDWSYGCEPLFVFTCNGSESSFLEMPGVEIYGYDSNYSEPNTLAYCENLCLEDCNCKGFQYSYNDGENHFKCYTKSQLLNGRSTPNFQGTMYLRVPKNHSRFHQESFVGFVQIPRVYAGDHVSRILRFFLWVAVAVGGFETVCIFVVWVFVVRTRQKSSTDQNGYHVVTNRFRKYSYSELKKATKGFSEEIGKGGGGVVYKGILSDQRHAAIKRLYEAKQGEGEFLAEVSIIGRLNHMNLIEMWGYCAEGKHRLLVYEYMENGSLAQKLSSNTLDWDKRYNIALGVARVLAYLHEECLEWILHCDIKPQNILLDSSYEPKVADFGLSKLLNRNNLNNSSFSMIRGTRGYMAPEWVLNLAITSKVDVYSYGIVLLEMITGKSPIQNIDGEDSYNGRLVTWVREKRSGTSWLEHIIDPAIKTNYDECKMEILVKVALHCVEEDKDIRPTMSQVLEMLQSHESDPQ 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01340 788 SMART blect_4 33 156 IPR001480 -
Cca07g01340 788 SMART serkin_6 510 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01340 788 Pfam Protein kinase domain 513 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01340 788 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Cca07g01340 788 Gene3D Transferase(Phosphotransferase) domain 1 585 788 - -
Cca07g01340 788 SUPERFAMILY Protein kinase-like (PK-like) 486 781 IPR011009 -
Cca07g01340 788 Gene3D Phosphorylase Kinase; domain 1 474 584 - -
Cca07g01340 788 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Cca07g01340 788 CDD PAN_AP_plant 341 421 - -
Cca07g01340 788 Gene3D Hepatocyte Growth Factor 349 417 - -
Cca07g01340 788 Pfam D-mannose binding lectin 79 170 IPR001480 -
Cca07g01340 788 PIRSF SRK 1 788 IPR024171 GO:0004674
Cca07g01340 788 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 7 785 - -
Cca07g01340 788 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 7 785 - -
Cca07g01340 788 ProSiteProfiles Protein kinase domain profile. 510 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01340 788 Gene3D - 18 154 IPR036426 -
Cca07g01340 788 ProSiteProfiles Bulb-type lectin domain profile. 18 151 IPR001480 -
Cca07g01340 788 CDD B_lectin 42 156 IPR001480 -
Cca07g01340 788 Pfam PAN-like domain 340 402 IPR003609 -
Cca07g01340 788 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 211 IPR036426 -
Cca07g01340 788 ProSitePatterns Protein kinases ATP-binding region signature. 516 538 IPR017441 GO:0005524
Cca07g01340 788 Pfam S-locus glycoprotein domain 245 323 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01340 Cca-Chr7 34701207 34709043 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01340 446 781 Receptor kinase-like Gene Family AT5G45780 37.791 2.90e-68 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Cca07g01340 Pkinase 1.3e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01340 - - gmx:100784287 1083.94