Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01338 ATGGCATTCTCAATCTCCCTCTTTGTTCTACTCATGCTTCTTTCTCTCCAATGTTCATCATCCCTTTTGTCACTGAACAAGGGTTCCTCTCTCTCAGTGGAGAAACATTCAGAAGACGTTATTCTCTCAAAAAACCAAATGTTCTGTGCTGGCTTTGTTCAACTTGCTCAAAACGCTTTCTCCTTTGGCGTATGGTTCAACGAGCCTCACACTAACAACACCAACACTCTGGTTTGGATGGCAAACCGACAACAACCCGTTAACGGAAAACTCTCAAAGCTTTGCCTTTTAAACAGTGGCAACCTCGTATTGCTCGATGCAGCTCAAATCACAACTTGGTCATCAAACACAGCTTCACACACCCAAGTCACGTTGCTTCTCCATGATGATGGCAATCTCGTGTTACGTGACTCCCAAGGAACCATTTTGTGGCAAAGCTTTGATTCGCCAACAGATACTCTCCTTCCGGGTCAACCTCTCACTAGATTCACACAACTTGTGTCTTCAAGAAGTGAGACTAACCATTCTTCTGGCTTCTATAAGCTTCTCTTCGACGATGACAACGTTCTTCGTCTTATTTACGATGGTCCTTATGTTTCAAGCCAGTATTGGCCAGTCCCTTGGATTCTAATTTGGCAAGCTGGGAGATTTAATTACAATAGCACTAGAATCGCAGTGTTAGATTCTCTCGGGAATTTCACTTCTTCGGATAATTATTTCTTTTCCACGAATGATTATGGCTCGGTGGTGCCAAGAAGATTGAAACTGGATTGTGATGGTAACGTTCGTGTGTACAGTAGAAATGACAAATCAAAGCAATGGTACGTTTCAAGGCAAGTGATATTTGATGCTTGTTCCATTCATGGGATTTGTGGTGCTAACAGTACTTGCGATTATGATCATGAAAGAGGAAGGAGGTGTTCGTGTTTACCAGGGTACAGAGTGAAGAATCATAGTGATTGGTCTTATGGGTGTGAACCAATGTTTGATCTTACTTGCGATGGAAATGAGTCAAACTCTACCTTTCTAAAGATACAGGGTGTTGAGTTTTACGGTTATGACCACAATTATGTCCAAAATAGTACTTACATGAATTGTGTGAATTTATGTTTGCGAGATTGTAACTGCAAAGGGTTTCAATACAGATATGATGGGGACCAAGGCTTTAGCTGCTACACAAAGTTAGAGTTGCGAAATGGGAGGCGTTCGCCGAGTTATAATGGAACAATTTACTTGAGACTTCCCAACGGGAATAGCTTCTCCAAGGTAGAATCTGTGAGGGTAGATGATCATGTTTGTTCCGTGATGCTTCACAAGGACTATGTTAGAAAGCCAGCAAATCGTTTTGTGAGATTTTCTTTGTGGCTTGCTACTGCAGTTGGAGCTTTGGAAATGATTTGTTTTTTGATGATTTGGAGTTTCTTGATTAGGACGCGCCAAAAGTCTTGTGCGGATCAACAAGGGTACCATCTTGCAACAGTGGGATTCAGAAAATATAGTTATCGTGAGTTGGAGGAGGCAACAAAGGGGTTTAGTGAAGAGATTGGAAGGGGTGGAGGAGGGGTTGTGTACAAAGGCATTTTATCAGATCAAAGACATGCTGCAATCAAGAGACTCTATGAAGCTAAACAAGGAGAAGGGGAATTCCTTGCTGAAGTTAGCATCATTGGAAGGCTTAACCACATGAACTTGATTGAAATGTGGGGTTATTGTGCTGAGGGCAAGCATAGGTTGTTGGTGTATGAATACATGGAGAATGGTTCTTTGGCACAAAAACTCTCATCCAACACACTTGATTGGAGTAAGAGATATAACATTGCTCTTGGAGTGGCAAGAGTTCTCGCATATTTGCATGAAGAATGTTTGGAGTGGATTTTGCATTGTGACATAAAACCCCAAAACATACTTCTTGATGCTAGTTATGAACCCAAGGTAGCAGATTTTGGGTTGTCCAAGCTACTAAACAGAAACACCCTCAACAAGAATTCAAGTTTTTCAATGATAAGAGGAACAAGAGGGTACATGGCACCTGAGTGGGTTTACAACTTACCAATAACCTCAAAGGTTGATGTTTACAGCTATGGAATTGTTCTCTTGGAGATGATAACAGGAAAAAGCCCAACAACCAGTGTCCAAAGCATTGATGGAGAAAACTCACATAATGAAAGGCTTGTAACATGGGTGCGAGAGAAAACGAGTGGCACGTATTCGCCAGAGTACATCATTGATCCTGCAATTAAAACAAATTACGATGAATTTAAGATGGCCCTTTTGGCTAAAGTGGCTTTGAAATGTGTGAAGGAAGACAAAGATGCAAGGCCAAGCATGAGCCAAGTGGTGGAAATGCTTCAAAGCCATGAAAGTGATCCTCTGAACTATGGAATTGTTCTCTTGGAGATGATAACAGGAAAAAGCCCAACAACCAGTGTCCAAAGCATTGATGGAGAAAACTCACATAATGAAAGGCTTGTAACATGGGTGCGAGAGAAAACGAGTGGCACGTATTCGCCAGAGTACATCATTGATCCTGCAATTAAAACAAATTACGATGAATTTAAGATGGCCCTTTTGGCTAAAGTGGCTTTGAAATGTGTGAAGGAAGACAAAGATGCAAGGCCAAGCATGAGCCAAGTGGTGGAAATGCTTCAAAGCCATGAAAgcattatggggaagaacttgtggcgtgagcttaagcaccgttacaatgttgctgagctcgatgttcccgagctcccggaggaggatgccgcccccctgaagacacaccgaaaaaggaaaaggggggagagagaggtcggggggacctccgcccctcgtagtgccgaggaggtgacctctaaggccgctgatgttgatacggtggaccttactgagagtccgccagccaaagaggctccctcagtggttgctgaggaaatggctcggactgctgagcctgctgtgccggccaccgaggtcggtgtgactgctgccgaggcggggtcgggggtccctactgttgactgtcaggatgcggagcaggggacgccggtctctgctacagctttggcaccaccggcggattcgtcgcaggggccttcccggacccagtatctagctcaccgcttcgggaagggtttggacaaggtgcggctggaccacgtgagtgcttccgccgacatgaactcgctgtggagcgcgggggtgaccgctgagaagttcttccctcagggctcgttgagctccgacgaccaagggttgatagacgaggtcggtcctgaagacagttttgatgtcgcccaggtgggggagctgcagcagctcgccgccttctctcgaagccgcgtccgttccttggaggacgaggtgacgtcctctcgtggtcaagtgcgggctctggaggacgctgtcacttctctaaagggggagttggcggcagcggccgaggagcgtctccgcggtgaggtcgttcttggtggccgagaagacgagattgcctccttgagggcggagcttgcggagttggcagcggggaaggcggtcgtggaggagaggctcgcggaggtcgaacgctccgtcgtggccgagcacaagaggggttttcagaaggctgtccgtcaggcacggctccttgctccagggtttgacttctcctccatgcatgtggagaaggtggttcgctttgggaggctggttcaggaggacgatgtcaacgacagttctagtgagaatgcctccgcctag 3723 0.2971 MAFSISLFVLLMLLSLQCSSSLLSLNKGSSLSVEKHSEDVILSKNQMFCAGFVQLAQNAFSFGVWFNEPHTNNTNTLVWMANRQQPVNGKLSKLCLLNSGNLVLLDAAQITTWSSNTASHTQVTLLLHDDGNLVLRDSQGTILWQSFDSPTDTLLPGQPLTRFTQLVSSRSETNHSSGFYKLLFDDDNVLRLIYDGPYVSSQYWPVPWILIWQAGRFNYNSTRIAVLDSLGNFTSSDNYFFSTNDYGSVVPRRLKLDCDGNVRVYSRNDKSKQWYVSRQVIFDACSIHGICGANSTCDYDHERGRRCSCLPGYRVKNHSDWSYGCEPMFDLTCDGNESNSTFLKIQGVEFYGYDHNYVQNSTYMNCVNLCLRDCNCKGFQYRYDGDQGFSCYTKLELRNGRRSPSYNGTIYLRLPNGNSFSKVESVRVDDHVCSVMLHKDYVRKPANRFVRFSLWLATAVGALEMICFLMIWSFLIRTRQKSCADQQGYHLATVGFRKYSYRELEEATKGFSEEIGRGGGGVVYKGILSDQRHAAIKRLYEAKQGEGEFLAEVSIIGRLNHMNLIEMWGYCAEGKHRLLVYEYMENGSLAQKLSSNTLDWSKRYNIALGVARVLAYLHEECLEWILHCDIKPQNILLDASYEPKVADFGLSKLLNRNTLNKNSSFSMIRGTRGYMAPEWVYNLPITSKVDVYSYGIVLLEMITGKSPTTSVQSIDGENSHNERLVTWVREKTSGTYSPEYIIDPAIKTNYDEFKMALLAKVALKCVKEDKDARPSMSQVVEMLQSHESDPLNYGIVLLEMITGKSPTTSVQSIDGENSHNERLVTWVREKTSGTYSPEYIIDPAIKTNYDEFKMALLAKVALKCVKEDKDARPSMSQVVEMLQSHESIMGKNLWRELKHRYNVAELDVPELPEEDAAPLKTHRKRKRGEREVGGTSAPRSAEEVTSKAADVDTVDLTESPPAKEAPSVVAEEMARTAEPAVPATEVGVTAAEAGSGVPTVDCQDAEQGTPVSATALAPPADSSQGPSRTQYLAHRFGKGLDKVRLDHVSASADMNSLWSAGVTAEKFFPQGSLSSDDQGLIDEVGPEDSFDVAQVGELQQLAAFSRSRVRSLEDEVTSSRGQVRALEDAVTSLKGELAAAAEERLRGEVVLGGREDEIASLRAELAELAAGKAVVEERLAEVERSVVAEHKRGFQKAVRQARLLAPGFDFSSMHVEKVVRFGRLVQEDDVNDSSSENASA 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01338 1240 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 791 887 - -
Cca07g01338 1240 CDD STKc_IRAK 515 784 - -
Cca07g01338 1240 Gene3D Transferase(Phosphotransferase) domain 1 584 787 - -
Cca07g01338 1240 Gene3D Transferase(Phosphotransferase) domain 1 788 899 - -
Cca07g01338 1240 Coils Coil 1158 1178 - -
Cca07g01338 1240 SUPERFAMILY Protein kinase-like (PK-like) 787 885 IPR011009 -
Cca07g01338 1240 Gene3D - 151 278 IPR036426 -
Cca07g01338 1240 Gene3D Phosphorylase Kinase; domain 1 474 583 - -
Cca07g01338 1240 MobiDBLite consensus disorder prediction 913 984 - -
Cca07g01338 1240 Pfam D-mannose binding lectin 76 162 IPR001480 -
Cca07g01338 1240 SMART blect_4 32 150 IPR001480 -
Cca07g01338 1240 Pfam S-locus glycoprotein domain 230 316 IPR000858 GO:0048544
Cca07g01338 1240 ProSiteProfiles EGF-like domain profile. 281 319 IPR000742 -
Cca07g01338 1240 CDD B_lectin 41 150 IPR001480 -
Cca07g01338 1240 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Cca07g01338 1240 ProSiteProfiles Bulb-type lectin domain profile. 16 148 IPR001480 -
Cca07g01338 1240 SMART serkin_6 509 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01338 1240 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 3 788 - -
Cca07g01338 1240 ProSiteProfiles PAN/Apple domain profile. 333 415 IPR003609 -
Cca07g01338 1240 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 3 788 - -
Cca07g01338 1240 CDD PAN_AP_plant 329 415 - -
Cca07g01338 1240 ProSitePatterns Protein kinases ATP-binding region signature. 515 537 IPR017441 GO:0005524
Cca07g01338 1240 Pfam Protein kinase domain 512 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01338 1240 ProSiteProfiles Protein kinase domain profile. 509 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01338 1240 Coils Coil 1109 1143 - -
Cca07g01338 1240 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 791 887 - -
Cca07g01338 1240 Gene3D - 23 148 IPR036426 -
Cca07g01338 1240 MobiDBLite consensus disorder prediction 913 933 - -
Cca07g01338 1240 Pfam PAN-like domain 333 394 IPR003609 -
Cca07g01338 1240 SUPERFAMILY Protein kinase-like (PK-like) 488 784 IPR011009 -
Cca07g01338 1240 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 205 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01338 Cca-Chr7 34622680 34631317 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01338 785 886 Trihelix Transcription Factor Family AT5G38560 32.381 3.47e-09 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Cca07g01338 Pkinase 1.3e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01338 - - gmx:100785351 1286.94