Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01330 ATGAAGTCCACTATGTCTCAGAATCAGAGTAATTGGGAAGCGGATAAAATGCTTGATGTTTATATTTACGATTATTTAATGAAAAGAAAATTACATGCCGCTGCAAAAGCTTTTGTTACAGAAGGAAAAGTTTCCACGGATCCAGTAGCAATTGATGCACCTGGAGGATTTCTTTACGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCAAGGACAAATGAAAAACATTCTGAGGCTGCTGCAGCGTACATTGAGCAAACAAAAGCTAGAGAACAACAACTTCAAATTCAGCAATTGCAACTAATGCAGCAACGCAGTGCTCAGTTACAGCGAAGAGATCCTAATCATCCTGCCCTTGGTGGTTCCATAAATGCCATGAACTCTGAAGGAATGTTGGGGCAGTCACCAGCAAGTGTGATGGCAATGAAAATGTATGAAGACCGAATTAAACTCCCTCATTCAATGGATTCAGAAGCATCTCCAACTCTTATTGATGCCAATAGGATGGCCCTACTCAAATCAACAGCTAGTCATCAAGGCCAATTTGTTCATGGAAATTCAGGGAATATGTCCACCGCATTGCAGCAAATTCCGGGGCGGACTCCTTTGACCACTGACATCAAAGGGGAAGTTAATTTAGTTGCTTCTCAAAAGAGTTTGCCTATGGATACATCAGTATATCGACAAGCAATTTTACAATCAAAATCTGGGCTAGGCAGTGCAGGATTAAATCAAGGAGTTACAAGTCTTCCATTGAAGGGCTGGCCTCTAGCTGGAATTGATCAACTAAGACCTAATTTGGGCGTACAAGTTCCGAAACCCAATTTGACATCCCAAAACCAATTTGTTTTGGCATCACAACAGCAACAAGTCATGGCACAGGCTCATTCGCAAAATAGCCTTGGAAATTCTAATTATGGTGATATGGATCCTCGCAGACTTTCTGGTCTTCCTCGAGGTAGCTTAAGTGCAAAGGATGGTCAGTCTACCAGCCAAATGCAGTCAGATTCACCTAAGATGAAGATGGCCCAGTCACAACATTCACCATCTCAACAACAGGAGCAATTACAGCAGCAGCAACTTCAGCAGAATAACAGAAAAAGAAAACAACACTCTGGTGCTGGATATAGCACTGGTACTGGTAACACTGCTGTTCCTTCACCCAATTCACCGCCATCAACACATACACCTGGTGATGGATTAAATACAGCCAGCAGCATGCAGCATGTTAGCAGTGTGCAAAAGAGCATGATGATGTATGGTACAGAGGCAGCAGGAGGCGTTGCATCATCGTCAAATTTGCTGGAGGACATGGAGCGATATGGAGATGTTGATGCTTTAGATGATACCGTGGAATCCTTTCTATCAAATGATGGTGGAGATGGTGGAAATCTCTATGGAACAGTGAAACAAAGTCCAGCTGATCAACAGAAAGAGTCTTCAAAAGGTTTCACCTTTGCTGAATTTGGTTGCATAAGAACAAGGTGCAGCAAGGTTACTTCTTGTCACTTTTCTTCAGATGGAAAGTGGCTTGCCAGTGCTGGAGATGACATGAAGGTTGTCATGTGGAACATGGACACTTTACAGACCGAGAGCACTCCTGCAGAACACAAATCAATTATTACAGATGTTCGGTTCAGACCAAATTCACCTCAGTTGGCAACTGCCTCAATTGATAAATCTGTCCGGTTATGGGACACAACCAATCCAAGCCGTTGTGTGCGGGAATATAGTGGGCACACTAGACCTATAATGTCTCTTGATTTCCATCCTAAGAAGACTGAACTTTTCTGCTTCTGTGATGGTGAAAATGAAATTCGGTATTGGAATATTACTTCGTCCACCTGCACACGTGTAACTAAGGTAGCTAGTGCACAAGTGAGGTTTCAGCCTAGACTGGGACATTTCCTGGCAGCGGCTTCTGATAAAGGAGTATCAATTTTTGATGTTGAAGCTGACTCACAAATTTACTCTCTCCAGGGTCATCCTGAACCGGTGAGCTATATTTGCTGGGATGCGACCGGTGACGCCTTGGCATCTGTGAGTCCAAATTTGGTGAAGGTTTGGAGTTTGACCTCAGGAGAATGCTTTCAGGAGTTCAACTCCACTGGGAACCAATTTCATTCCTGTGTTTTTCATCCAAGTTATTCAACTTTATTGGTGATTGGAGGAAATTCGTCCTTAGAGTTATGGAACATGTCCGAGAACAAAAGCATGACAATTGGTGCTCATGAAAACATAATATCTTCTTTGGCTCAGTCTCCTGTCACTGGAATGGTTGCCTCTGCAAGTTATGACAACTATGTAAAGCTGTGGAAATAA 2325 0.4288 MKSTMSQNQSNWEADKMLDVYIYDYLMKRKLHAAAKAFVTEGKVSTDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEAAAAYIEQTKAREQQLQIQQLQLMQQRSAQLQRRDPNHPALGGSINAMNSEGMLGQSPASVMAMKMYEDRIKLPHSMDSEASPTLIDANRMALLKSTASHQGQFVHGNSGNMSTALQQIPGRTPLTTDIKGEVNLVASQKSLPMDTSVYRQAILQSKSGLGSAGLNQGVTSLPLKGWPLAGIDQLRPNLGVQVPKPNLTSQNQFVLASQQQQVMAQAHSQNSLGNSNYGDMDPRRLSGLPRGSLSAKDGQSTSQMQSDSPKMKMAQSQHSPSQQQEQLQQQQLQQNNRKRKQHSGAGYSTGTGNTAVPSPNSPPSTHTPGDGLNTASSMQHVSSVQKSMMMYGTEAAGGVASSSNLLEDMERYGDVDALDDTVESFLSNDGGDGGNLYGTVKQSPADQQKESSKGFTFAEFGCIRTRCSKVTSCHFSSDGKWLASAGDDMKVVMWNMDTLQTESTPAEHKSIITDVRFRPNSPQLATASIDKSVRLWDTTNPSRCVREYSGHTRPIMSLDFHPKKTELFCFCDGENEIRYWNITSSTCTRVTKVASAQVRFQPRLGHFLAAASDKGVSIFDVEADSQIYSLQGHPEPVSYICWDATGDALASVSPNLVKVWSLTSGECFQEFNSTGNQFHSCVFHPSYSTLLVIGGNSSLELWNMSENKSMTIGAHENIISSLAQSPVTGMVASASYDNYVKLWK 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01330 774 Pfam WD domain, G-beta repeat 739 774 IPR001680 GO:0005515
Cca07g01330 774 Pfam WD domain, G-beta repeat 499 525 IPR001680 GO:0005515
Cca07g01330 774 Pfam WD domain, G-beta repeat 535 567 IPR001680 GO:0005515
Cca07g01330 774 Pfam WD domain, G-beta repeat 573 611 IPR001680 GO:0005515
Cca07g01330 774 SUPERFAMILY WD40 repeat-like 492 774 IPR036322 GO:0005515
Cca07g01330 774 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Cca07g01330 774 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 9 774 - -
Cca07g01330 774 ProSiteProfiles Trp-Asp (WD) repeats profile. 493 534 IPR001680 GO:0005515
Cca07g01330 774 ProSitePatterns Trp-Asp (WD) repeats signature. 512 526 IPR019775 -
Cca07g01330 774 ProSiteProfiles Trp-Asp (WD) repeats profile. 578 620 IPR001680 GO:0005515
Cca07g01330 774 MobiDBLite consensus disorder prediction 323 411 - -
Cca07g01330 774 SMART Lish 14 46 IPR006594 GO:0005515
Cca07g01330 774 MobiDBLite consensus disorder prediction 457 478 - -
Cca07g01330 774 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 774 IPR044716 GO:0003714
Cca07g01330 774 Gene3D - 493 626 IPR015943 GO:0005515
Cca07g01330 774 Gene3D - 627 774 IPR015943 GO:0005515
Cca07g01330 774 MobiDBLite consensus disorder prediction 290 411 - -
Cca07g01330 774 Pfam LisH 16 41 IPR006594 GO:0005515
Cca07g01330 774 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 742 774 - -
Cca07g01330 774 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 535 567 - -
Cca07g01330 774 SMART WD40_4 614 650 IPR001680 GO:0005515
Cca07g01330 774 SMART WD40_4 694 733 IPR001680 GO:0005515
Cca07g01330 774 SMART WD40_4 571 611 IPR001680 GO:0005515
Cca07g01330 774 SMART WD40_4 653 691 IPR001680 GO:0005515
Cca07g01330 774 SMART WD40_4 735 774 IPR001680 GO:0005515
Cca07g01330 774 SMART WD40_4 528 567 IPR001680 GO:0005515
Cca07g01330 774 SMART WD40_4 486 525 IPR001680 GO:0005515
Cca07g01330 774 MobiDBLite consensus disorder prediction 290 307 - -
Cca07g01330 774 ProSiteProfiles Trp-Asp (WD) repeats profile. 742 774 IPR001680 GO:0005515
Cca07g01330 774 ProSiteProfiles Trp-Asp (WD) repeats profile. 535 567 IPR001680 GO:0005515
Cca07g01330 774 CDD WD40 498 774 - -
Cca07g01330 774 PRINTS G protein beta WD-40 repeat signature 512 526 IPR020472 -
Cca07g01330 774 PRINTS G protein beta WD-40 repeat signature 554 568 IPR020472 -
Cca07g01330 774 PRINTS G protein beta WD-40 repeat signature 761 774 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01330 Cca-Chr7 34425638 34437379 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01330 575 773 Miscellaneous Gene Families AT5G08390 20.098 5.38e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Cca07g01330 WD40 0.063 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01330 - - gmx:100786946 1292.33