Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca07g01328 | ATGGAGAACAACGCATTCAGAGATCGAATCTTTGCAGAAAATGAACAAGAAGAAATCCCCGATTCCTTTAATTGCTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTGCTATCTTGTGGTCATATATGCTGTTTCTGGTGTGTCTATAATTCAATGAACTGTCTGCGTGAGTCTCAATGTCCAGTATGTAGGAATCAATACTATCACTTCCCAACAGTCTGCCAAATGCTTCACTTTTTGCTTCTTAAGATCTATACTGTTGCTTACAAGAGAAGGGAGAACCAAACTCTTGAGGAAGAAAATAAATCAGGGTTCTACTCCCCTCAATTTGATCCTGATACTTGTGAATCGCAAGCTAAATTTGGTCATTCTGGTATCCCTTCTTCCTCCTCTATTACGAATTTGACATCCAACTCTTGCAATGTGGGAACTTCTGAATGCGTGGAGCAATCAGGGCCCACTGCCCATGAAGGAGATGAAGGCACTGTCTATTCTGATGGAAAGCCTGATATTAGAACTCCTGCTAAAGAAAAAAAAATTCCTCAGGAAGAGCTTTCTCCACAACAGAAATTATCAGTTGCAGATGTGATGTGTACAATGTGCAAGCAACTGCTCTTTCATCCTGTAGTTCTTAATTGTGGTCATGTATACTGTCAAGCTTGTGTCATGAACATAGATGATGAGATGCTTAGATGTCAAGTTTGTCAAAGTCCACATCCCAGAGGATTTCCAAAAGTGTGTTTGGAGTTGGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATGGACAACGGAGAGATGCCTTTGAACAGAGGCAAATCAAAGTCAAACCTGAGATCCCTTCTTCTGGTTCATTGGATAATGGTAACAAAGGAGGAAGTATAGATTGGTGGACCGATCCTGACTCAAAAGTTCACATTGGAGTTGGTTGTGATTTTTGCGGGATGTTTCCCATAATTGGAGATAGATATAGATGCATTGACTGTAAAGAGAAGATGGGTTTTGATCTTTGTGGTGATTGCTATGCAACCCGGTCCAAGCTTCCCGGTCGATTCAACCAACAACACACCTCAGAGCACAAATTCAAGCTTGTAGAACCCAACGTTCTTCAGAACATAATGTTGAGGCTGGCCACAGCACAATTAGGGGACACTTCTATGGACCTGGGGTCTGTAGGAAACTTAGAAATTACTGCAGATGGCGCTGCATTGTTTGATGATGGAGAAGATAACCACAGTGACTCTGAAGGCACCAACTGA | 1263 | 0.4165 | MENNAFRDRIFAENEQEEIPDSFNCCVCLDLLYKPIVLSCGHICCFWCVYNSMNCLRESQCPVCRNQYYHFPTVCQMLHFLLLKIYTVAYKRRENQTLEEENKSGFYSPQFDPDTCESQAKFGHSGIPSSSSITNLTSNSCNVGTSECVEQSGPTAHEGDEGTVYSDGKPDIRTPAKEKKIPQEELSPQQKLSVADVMCTMCKQLLFHPVVLNCGHVYCQACVMNIDDEMLRCQVCQSPHPRGFPKVCLELDHFLEEQFPEEYGQRRDAFEQRQIKVKPEIPSSGSLDNGNKGGSIDWWTDPDSKVHIGVGCDFCGMFPIIGDRYRCIDCKEKMGFDLCGDCYATRSKLPGRFNQQHTSEHKFKLVEPNVLQNIMLRLATAQLGDTSMDLGSVGNLEITADGAALFDDGEDNHSDSEGTN | 420 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca07g01328 | 420 | SUPERFAMILY | RING/U-box | 194 | 240 | - | - | |
Cca07g01328 | 420 | Pfam | Zinc finger, ZZ type | 308 | 347 | IPR000433 | GO:0008270 | |
Cca07g01328 | 420 | Pfam | Zinc finger, C3HC4 type (RING finger) | 23 | 67 | - | - | |
Cca07g01328 | 420 | SUPERFAMILY | RING/U-box | 11 | 75 | - | - | |
Cca07g01328 | 420 | SUPERFAMILY | RING/U-box | 300 | 366 | - | - | |
Cca07g01328 | 420 | SMART | ring_2 | 25 | 64 | IPR001841 | - | |
Cca07g01328 | 420 | SMART | ring_2 | 199 | 236 | IPR001841 | - | |
Cca07g01328 | 420 | ProSiteProfiles | Zinc finger RING-type profile. | 199 | 237 | IPR001841 | - | |
Cca07g01328 | 420 | ProSitePatterns | Zinc finger RING-type signature. | 214 | 223 | IPR017907 | - | |
Cca07g01328 | 420 | ProSiteProfiles | Zinc finger ZZ-type profile. | 307 | 371 | IPR000433 | GO:0008270 | |
Cca07g01328 | 420 | ProSiteProfiles | Zinc finger RING-type profile. | 25 | 65 | IPR001841 | - | |
Cca07g01328 | 420 | PANTHER | UNCHARACTERIZED | 12 | 387 | - | - | |
Cca07g01328 | 420 | CDD | RING-HC | 25 | 64 | - | - | |
Cca07g01328 | 420 | MobiDBLite | consensus disorder prediction | 162 | 185 | - | - | |
Cca07g01328 | 420 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE | 12 | 387 | - | - | |
Cca07g01328 | 420 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 110 | IPR013083 | - | |
Cca07g01328 | 420 | Pfam | RING-type zinc-finger | 199 | 225 | IPR027370 | - | |
Cca07g01328 | 420 | MobiDBLite | consensus disorder prediction | 149 | 187 | - | - | |
Cca07g01328 | 420 | Gene3D | - | 301 | 366 | IPR043145 | - | |
Cca07g01328 | 420 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 185 | 281 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca07g01328 | Cca-Chr7 | 34390896 | 34398187 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca07g01328 | 23 | 67 | C3H Transcription Factor Family | AT2G42030 | 40.000 | 1.02e-07 | 52.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca07g01328 | - | - | gmx:100787174 | 775.778 |