Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01328 ATGGAGAACAACGCATTCAGAGATCGAATCTTTGCAGAAAATGAACAAGAAGAAATCCCCGATTCCTTTAATTGCTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTGCTATCTTGTGGTCATATATGCTGTTTCTGGTGTGTCTATAATTCAATGAACTGTCTGCGTGAGTCTCAATGTCCAGTATGTAGGAATCAATACTATCACTTCCCAACAGTCTGCCAAATGCTTCACTTTTTGCTTCTTAAGATCTATACTGTTGCTTACAAGAGAAGGGAGAACCAAACTCTTGAGGAAGAAAATAAATCAGGGTTCTACTCCCCTCAATTTGATCCTGATACTTGTGAATCGCAAGCTAAATTTGGTCATTCTGGTATCCCTTCTTCCTCCTCTATTACGAATTTGACATCCAACTCTTGCAATGTGGGAACTTCTGAATGCGTGGAGCAATCAGGGCCCACTGCCCATGAAGGAGATGAAGGCACTGTCTATTCTGATGGAAAGCCTGATATTAGAACTCCTGCTAAAGAAAAAAAAATTCCTCAGGAAGAGCTTTCTCCACAACAGAAATTATCAGTTGCAGATGTGATGTGTACAATGTGCAAGCAACTGCTCTTTCATCCTGTAGTTCTTAATTGTGGTCATGTATACTGTCAAGCTTGTGTCATGAACATAGATGATGAGATGCTTAGATGTCAAGTTTGTCAAAGTCCACATCCCAGAGGATTTCCAAAAGTGTGTTTGGAGTTGGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATGGACAACGGAGAGATGCCTTTGAACAGAGGCAAATCAAAGTCAAACCTGAGATCCCTTCTTCTGGTTCATTGGATAATGGTAACAAAGGAGGAAGTATAGATTGGTGGACCGATCCTGACTCAAAAGTTCACATTGGAGTTGGTTGTGATTTTTGCGGGATGTTTCCCATAATTGGAGATAGATATAGATGCATTGACTGTAAAGAGAAGATGGGTTTTGATCTTTGTGGTGATTGCTATGCAACCCGGTCCAAGCTTCCCGGTCGATTCAACCAACAACACACCTCAGAGCACAAATTCAAGCTTGTAGAACCCAACGTTCTTCAGAACATAATGTTGAGGCTGGCCACAGCACAATTAGGGGACACTTCTATGGACCTGGGGTCTGTAGGAAACTTAGAAATTACTGCAGATGGCGCTGCATTGTTTGATGATGGAGAAGATAACCACAGTGACTCTGAAGGCACCAACTGA 1263 0.4165 MENNAFRDRIFAENEQEEIPDSFNCCVCLDLLYKPIVLSCGHICCFWCVYNSMNCLRESQCPVCRNQYYHFPTVCQMLHFLLLKIYTVAYKRRENQTLEEENKSGFYSPQFDPDTCESQAKFGHSGIPSSSSITNLTSNSCNVGTSECVEQSGPTAHEGDEGTVYSDGKPDIRTPAKEKKIPQEELSPQQKLSVADVMCTMCKQLLFHPVVLNCGHVYCQACVMNIDDEMLRCQVCQSPHPRGFPKVCLELDHFLEEQFPEEYGQRRDAFEQRQIKVKPEIPSSGSLDNGNKGGSIDWWTDPDSKVHIGVGCDFCGMFPIIGDRYRCIDCKEKMGFDLCGDCYATRSKLPGRFNQQHTSEHKFKLVEPNVLQNIMLRLATAQLGDTSMDLGSVGNLEITADGAALFDDGEDNHSDSEGTN 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01328 420 SUPERFAMILY RING/U-box 194 240 - -
Cca07g01328 420 Pfam Zinc finger, ZZ type 308 347 IPR000433 GO:0008270
Cca07g01328 420 Pfam Zinc finger, C3HC4 type (RING finger) 23 67 - -
Cca07g01328 420 SUPERFAMILY RING/U-box 11 75 - -
Cca07g01328 420 SUPERFAMILY RING/U-box 300 366 - -
Cca07g01328 420 SMART ring_2 25 64 IPR001841 -
Cca07g01328 420 SMART ring_2 199 236 IPR001841 -
Cca07g01328 420 ProSiteProfiles Zinc finger RING-type profile. 199 237 IPR001841 -
Cca07g01328 420 ProSitePatterns Zinc finger RING-type signature. 214 223 IPR017907 -
Cca07g01328 420 ProSiteProfiles Zinc finger ZZ-type profile. 307 371 IPR000433 GO:0008270
Cca07g01328 420 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Cca07g01328 420 PANTHER UNCHARACTERIZED 12 387 - -
Cca07g01328 420 CDD RING-HC 25 64 - -
Cca07g01328 420 MobiDBLite consensus disorder prediction 162 185 - -
Cca07g01328 420 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 12 387 - -
Cca07g01328 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 110 IPR013083 -
Cca07g01328 420 Pfam RING-type zinc-finger 199 225 IPR027370 -
Cca07g01328 420 MobiDBLite consensus disorder prediction 149 187 - -
Cca07g01328 420 Gene3D - 301 366 IPR043145 -
Cca07g01328 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 281 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01328 Cca-Chr7 34390896 34398187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01328 23 67 C3H Transcription Factor Family AT2G42030 40.000 1.02e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01328 - - gmx:100787174 775.778