Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01304 ATGGGTTTCTTCATCTGTTTAAATTTGTTCTTTGTTTTGTTGATGCTGTTTTATTATATGTTAGATGTAGGTATTGCCATAGACATCATTACACCGTCTCAATTCATCAAGGACCCAGAAACTCTAAGCTCCAAAGATGGAAACTTCACCTTGGGGTTCTTCACCCCTCAAAATTCTACAAATCGTTACGTTGGAGTTTGGTGGAAGTCTCAATCCACAGTTATATGGGTTGCTAACAGAAACCAACCACTAAATGATTCTTCAGGGATTGTTAAAATTTCTGAAGATGGCAATCTTGTGGTATTGAATGGACAAAAACGAGTCATTTGGTCATCAAATGCGTCCAACATAACAACATCCAACACTAGTTCCCAGTTTTCAGACCCTGGAAAACTTGTACTCATGGAAAGCACTAGAGGAACCATCTTATGGGATAGTTTTCAGCAACCTTCTGATACATTACTCCCGGGTATGAAAATTTCAAGTAACAAAAGAACAGGTGAGAAAGTAGAACTTACATCATGGAAAAGCCCTTCTAATCCCTCCGCTGGTAGCTTCTCTTGCAGTGTTGTTCAACGCATAAACACACTTGAAGTGTTCATTTGGAATGAAACTAGACCATACTGGCGCAGTGGTCCATGGAATGGTGGAGTGTTTACAGGGATACGGTGGATGATGACAAGTGCATATCTTACTGGTTTCCGCAGTGAAGATGATGGGGAAGGAAATGTTGATGTCTATTACACAATACAAAATGAGTTACAATTTTTTATCTATAACCtgaattcacaaggcgagtctcaactgaaatggtggaatgatggggtgaaagaaatgcaagttaaatggactagtcacgaatcggattgtgatgtttatggtatatgcggggcatatgcaatctgtaattcactgaagtcaccaatatgcagctgtttgagagggtttgagccaaggaaccaagaggagtggaatagacaaaactggactaatgggtgtgctaggagggctcctttgcagtgtgaaagggacaacaatcaaagcacaagtgcagaaagaaaggaagatgggtttctGAAACTGCAGATGATTAAAGTTCCTGATTTTGCAGAAGGGTCTGCTGTTACACCAGACAGATGCAGAAGCCAGTGCTTGAAGAATTGCTCTTGCGTTGCATATTCTCACGAGGATGGAATTGGCTGTATGTCTTGGACAGAGAATCTAATTGACATACAACAGTTCCCAAGTGCAGGACTTGATCTATATGTTCGTTTAGCCTACACAGAACTTGCAGATAAAGGATCAAACAAATCAATCATCATTACCATCACAACGATAATAGGAACCATCATAATTGTTGTTTGTGTATATTTAATATGGAGAAGGACTACAAATCACCCAGCCAAACTGTGGCAATCTATTAAATCAACAAGGAGAAAGATAAACAAAGCTATGCTATTTAACAATGGTGAAACATCACATGAACTTATGAGTGACAATGTTATTGGAGAACTGTCACAAGTTGAGCTCCAGGAACTGTTACTATTTAGTTTGGAAAAGCTTGTAACTGCCACAAACAACTTCCACTTGTCCAATAAACTTGGGCAGGGTGGTTTTGGTCCAGTATACAAGGGAAAACTGCAAGATGGACAGGAAATTGCAGTTAAAAGACTCTCTAGAGCATCAGGACAAGGGATACAGGAATTCATGAATGAAGTAGTGGTGATTTCCAAGCTTCAACACCGCAATCTTGTAAGACTTCTTGGCTGCTGCATTGAAGGTGATGAAAAGATGCTGATATATGAATACATGCCAAACAAGAGTTTGGATGCGTTTGTCTTTGGTCCATCAAAAAACCAACTCCTAGATTGGATGAAGCGCTTTAGCATAATAGAAGGAATAGCTCGGGGACTACTTTATCTTCACAGAGATTCCAGACTAAGAATCATACACAGGAATTTGAAAGCAAGTAACATCTTGTTAGATGAAGATATGAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTTAGAGGGACTACTGAAGATCAAGCCAACACAAGCAGAGTTGTTGGAACTTATGGTTATATGTCTCCTGAGTATGCAATGCAAGGATTATTTTCAGAGAAATCAGATGTGTTTAGCTTTGGTGTTTTGGTACTAGAGATTGTTAGTGGAAGAAGAAACTCGAGCTTTTATGATGATGAGCATGCTCTTAGCCTTTTAGGATTTGCTTGGATACAATGGAAAGAAGGCAATATATTATCCATAATAGATACAGGAATATATGATCCAAGTCACCATAAAAATATTTTAAGGAGCATACACATTGGACTTCTGTGTGTACAAGAACATGCTACAGATCGGCCCACTATGGCTGCAGTAATTTCCATGCTCAACAGTGAGGTTGCGGTTCTTCCTCCTCCAAGTCAACCTGCATTCATCAATATGTTGAGTTCAAGGTCATTTGAAGAAAGTCCTAGATTCTGCTCCATCAATACCGTCAGTATTACAGATATATATGGTAGATAG 2535 0.3428 MGFFICLNLFFVLLMLFYYMLDVGIAIDIITPSQFIKDPETLSSKDGNFTLGFFTPQNSTNRYVGVWWKSQSTVIWVANRNQPLNDSSGIVKISEDGNLVVLNGQKRVIWSSNASNITTSNTSSQFSDPGKLVLMESTRGTILWDSFQQPSDTLLPGMKISSNKRTGEKVELTSWKSPSNPSAGSFSCSVVQRINTLEVFIWNETRPYWRSGPWNGGVFTGIRWMMTSAYLTGFRSEDDGEGNVDVYYTIQNELQFFIYNLNSQGESQLKWWNDGVKEMQVKWTSHESDCDVYGICGAYAICNSLKSPICSCLRGFEPRNQEEWNRQNWTNGCARRAPLQCERDNNQSTSAERKEDGFLKLQMIKVPDFAEGSAVTPDRCRSQCLKNCSCVAYSHEDGIGCMSWTENLIDIQQFPSAGLDLYVRLAYTELADKGSNKSIIITITTIIGTIIIVVCVYLIWRRTTNHPAKLWQSIKSTRRKINKAMLFNNGETSHELMSDNVIGELSQVELQELLLFSLEKLVTATNNFHLSNKLGQGGFGPVYKGKLQDGQEIAVKRLSRASGQGIQEFMNEVVVISKLQHRNLVRLLGCCIEGDEKMLIYEYMPNKSLDAFVFGPSKNQLLDWMKRFSIIEGIARGLLYLHRDSRLRIIHRNLKASNILLDEDMNPKISDFGMARIFRGTTEDQANTSRVVGTYGYMSPEYAMQGLFSEKSDVFSFGVLVLEIVSGRRNSSFYDDEHALSLLGFAWIQWKEGNILSIIDTGIYDPSHHKNILRSIHIGLLCVQEHATDRPTMAAVISMLNSEVAVLPPPSQPAFINMLSSRSFEESPRFCSINTVSITDIYGR 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01304 844 PIRSF SRK 1 844 IPR024171 GO:0004674
Cca07g01304 844 Gene3D Phosphorylase Kinase; domain 1 490 603 - -
Cca07g01304 844 CDD B_lectin 33 150 IPR001480 -
Cca07g01304 844 CDD PAN_AP_plant 338 426 - -
Cca07g01304 844 ProSiteProfiles Protein kinase domain profile. 528 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01304 844 CDD STKc_IRAK 534 801 - -
Cca07g01304 844 Gene3D Transferase(Phosphotransferase) domain 1 604 806 - -
Cca07g01304 844 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 22 841 - -
Cca07g01304 844 Pfam D-mannose binding lectin 73 176 IPR001480 -
Cca07g01304 844 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 181 IPR036426 -
Cca07g01304 844 SMART ntp_6 353 425 IPR003609 -
Cca07g01304 844 ProSiteProfiles PAN/Apple domain profile. 341 426 IPR003609 -
Cca07g01304 844 Pfam Protein tyrosine and serine/threonine kinase 529 800 IPR001245 GO:0004672|GO:0006468
Cca07g01304 844 Gene3D - 23 148 IPR036426 -
Cca07g01304 844 Pfam PAN-like domain 353 411 IPR003609 -
Cca07g01304 844 Pfam S-locus glycoprotein domain 209 319 IPR000858 GO:0048544
Cca07g01304 844 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 22 841 - -
Cca07g01304 844 SMART blect_4 33 150 IPR001480 -
Cca07g01304 844 ProSiteProfiles Bulb-type lectin domain profile. 27 147 IPR001480 -
Cca07g01304 844 SUPERFAMILY Protein kinase-like (PK-like) 512 832 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01304 Cca-Chr7 33601181 33604948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01304 514 844 Receptor kinase-like Gene Family AT4G11530 57.018 1.53e-123 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca07g01304 PK_Tyr_Ser-Thr 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01304 - - gmx:100779455 1234.94