Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01298 ATGCCATGTTTTCTCTTTTCAGATGTTGGTGCTTCCACAGACACCATCACGTCATCTCAGTTCATCAAGGACCCTGAAACTTTAACCTCCAGAGATGGTAACTTCACGTTGGGGTTCTTCACCCCTCAAAACTCTACAAAGCGCTACGTTGGAATTTGGTGGAAGTCTGATGAGTCCACAATCATATGGGTTGCTAACAGAAACCAACCACTGAATGATTCCTCTGGAGTTGTTACCATATCTGAAGATAGCAATCTTGTGGTTCTGAATGGGAAGAAACATGTTATTTGGTCAACAAATGTGTCCAATCTTGGATCCAAATGTACTTCCAAACTTCTAGATTCTGGGAACCTTGTACTAGTGGAAAGCACAACAGGAAGCAACGTGTGGGAAAGTTTCCAGCATCCTTGCAATGCATTGTTACCCAACATGAAGCTTACAACTAACAAAGTTACAGGTGAGAAAGTAAAAGTAACTTCATGGAAAAGTGCTTCTGATGCATCCACTGGGAGCTTCTCTGCAAGTCTTGAACGCCTTAGTATACCTGAAGTATTCATTTGGAATGAAACTCGCCCATTCTGGCGCACTGGTCCATGGAATGCTCCAGATTTTGCAGATAGGTCATCTCTAAGTCTTCAACCAGACACGTGCAGAAGCCGATGTGTGGAGAATTGTTCTTGCATTGCTTATTCATATGATGCTCAGATTGGTTGCATGTCTTGGACAGGGAATCTAATTGACATAACACAATTCTCAAACGGAGGACTTGATCTTTATATTCGTGTAGCCTACACTGAACTTGATAAGGAGAGAAACAGGATAGGCATCATTACTATTATTACAGTAACAACAGGAATTACCTTACTTGTCATTTGTGCATACATCAAGTGGAGAAGGATTTCTAACCACCACGGTAGTGGAGCACCTACAAGTGACAACGTATTTGGAGATCTGTCACAAGTCAAACTCCAAGAGCTATTAATACTTGATTTTGCAAAGCTTGTAACTGCCACAAACAACTTTCACCCATCTAATAAACTTGGACAGGGTGGTTTTGGTCCAGTATACAAGGGGCAATTGCCAGATGGTCAGGAAATTGCTGTTAAAAGACTTTCTAGGACATCTGGACAAGGTCTAGAAGAATTCATGAATGAAGTGGTAGTGATTTCCAAGCTTCAACACCGCAATCTTGTAAGACTTCTTGGCTGCTGCATTGAAGGGAAGGAAAAGATGTTGATTTATGAGTACATGCCAAATAAAAGTTTGGATGCATATGTCTTTGATCCAGCAAAAAATGTAGTCCTTGATTGGAGAAAACGTTTTAGCATAATAGATGGAGTGGCTCGTGGAATGCTTTATCTTCATAGAGATTCTAGGCTAAAAATCATTCACAGGGACTTGAAGGCAAGTAATATCTTACTTGATGAGGAGCTAAATCCAAAAATATCAGACTTTGGTATGGCGAGAATCTTTGGTAGGAATGAGGATCAAGCTAATACTAAAAGAGTTGTTGGAACATATGGTTATATGTCTCCTGAATATGCAATGCAAGGACTGTTTTCTGAGAAATCAGATGTCTTTAGCTTTGGAGTTTTGCTACTCGAGATTGTTAGTGGAAGACGAAATTCAAGCTTCTATGACAGCGAGAATTTTCTGACCCTTTTAGGATTTGTCTGGATGCGGTGGACGGAAAACAATATATTATCTATAATAGATCCAAGAATATATGATCCTAGTCTTCATAAAGATATTTTGAGGTGCATACACATAGGACTTCTATGTGTGCAAGAATTTGTTGCAGAAAGGCCCACTATGGCTACTGTAATTTCTATGCTTCAAAGTGAGATTGTGAATCTTCCTCCTCCAACAAAACCTGCGTTCACCCTGAGGCATAATATGTTAAGATCAATGTCCTTTGCTAAAAGCAATGGCTTGAACTCCCTCAACTTTGTCAGCATTTCAAGCATTCAAGGCAGATAG 1980 0.4005 MPCFLFSDVGASTDTITSSQFIKDPETLTSRDGNFTLGFFTPQNSTKRYVGIWWKSDESTIIWVANRNQPLNDSSGVVTISEDSNLVVLNGKKHVIWSTNVSNLGSKCTSKLLDSGNLVLVESTTGSNVWESFQHPCNALLPNMKLTTNKVTGEKVKVTSWKSASDASTGSFSASLERLSIPEVFIWNETRPFWRTGPWNAPDFADRSSLSLQPDTCRSRCVENCSCIAYSYDAQIGCMSWTGNLIDITQFSNGGLDLYIRVAYTELDKERNRIGIITIITVTTGITLLVICAYIKWRRISNHHGSGAPTSDNVFGDLSQVKLQELLILDFAKLVTATNNFHPSNKLGQGGFGPVYKGQLPDGQEIAVKRLSRTSGQGLEEFMNEVVVISKLQHRNLVRLLGCCIEGKEKMLIYEYMPNKSLDAYVFDPAKNVVLDWRKRFSIIDGVARGMLYLHRDSRLKIIHRDLKASNILLDEELNPKISDFGMARIFGRNEDQANTKRVVGTYGYMSPEYAMQGLFSEKSDVFSFGVLLLEIVSGRRNSSFYDSENFLTLLGFVWMRWTENNILSIIDPRIYDPSLHKDILRCIHIGLLCVQEFVAERPTMATVISMLQSEIVNLPPPTKPAFTLRHNMLRSMSFAKSNGLNSLNFVSISSIQGR 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01298 659 Pfam PAN-like domain 193 248 IPR003609 -
Cca07g01298 659 ProSiteProfiles Bulb-type lectin domain profile. 13 133 IPR001480 -
Cca07g01298 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Cca07g01298 659 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 202 658 - -
Cca07g01298 659 Gene3D Phosphorylase Kinase; domain 1 311 416 - -
Cca07g01298 659 Gene3D - 7 134 IPR036426 -
Cca07g01298 659 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 9 208 - -
Cca07g01298 659 Gene3D Transferase(Phosphotransferase) domain 1 417 618 - -
Cca07g01298 659 ProSiteProfiles Protein kinase domain profile. 341 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01298 659 Pfam Protein tyrosine and serine/threonine kinase 344 610 IPR001245 GO:0004672|GO:0006468
Cca07g01298 659 CDD PAN_AP_plant 193 263 - -
Cca07g01298 659 CDD STKc_IRAK 347 613 - -
Cca07g01298 659 SUPERFAMILY Protein kinase-like (PK-like) 328 639 IPR011009 -
Cca07g01298 659 CDD B_lectin 19 136 IPR001480 -
Cca07g01298 659 SMART blect_4 19 136 IPR001480 -
Cca07g01298 659 SMART serkin_6 341 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01298 659 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 202 658 - -
Cca07g01298 659 ProSiteProfiles PAN/Apple domain profile. 188 263 IPR003609 -
Cca07g01298 659 SMART ntp_6 179 262 IPR003609 -
Cca07g01298 659 Pfam D-mannose binding lectin 60 162 IPR001480 -
Cca07g01298 659 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 208 - -
Cca07g01298 659 SUPERFAMILY alpha-D-mannose-specific plant lectins 61 166 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01298 Cca-Chr7 33435684 33478614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01298 276 630 Receptor kinase-like Gene Family AT4G23230 53.803 8.76e-132 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca07g01298 PK_Tyr_Ser-Thr 7.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01298 - - mtr:MTR_7g056430 687.952